Gene detail

Detail information of GWHGAAZE016894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004289406.1	0	PREDICTED: WD repeat-containing protein 44-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q6L4F8\|GBLPB_ORYSJ	0.000000002	Guanine nucleotide-binding protein subunit beta-like protein B
trEMBL	tr\|B9RU08\|B9RU08_RICCO	0	WD-repeat protein, putative {ECO:0000313\|EMBL:EEF45127.1}
TAIR10	AT5G24320.1	1E-101	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85123085	85126998	-
GWHAAZE00000004	mRNA	85123085	85126998	-
GWHAAZE00000004	exon	85123085	85123587	-
GWHAAZE00000004	exon	85124424	85124597	-
GWHAAZE00000004	exon	85125077	85125131	-
GWHAAZE00000004	exon	85125296	85125453	-
GWHAAZE00000004	exon	85125779	85125869	-
GWHAAZE00000004	exon	85126147	85126998	-
GWHAAZE00000004	CDS	85126147	85126998	-
GWHAAZE00000004	CDS	85125779	85125869	-
GWHAAZE00000004	CDS	85125296	85125453	-
GWHAAZE00000004	CDS	85125077	85125131	-
GWHAAZE00000004	CDS	85124424	85124597	-
GWHAAZE00000004	CDS	85123085	85123587	-

Transcript Sequence
>GWHTAAZE016914 ATGTTGAGCTTTGATGAAGGAGAAGAACTCTTCTTTGATACTGCTGATTCTTTGTTACTCAATGAGTCTCCTTTTGTAAAAGAAGATCCGTATAGTAGCAATTTAGAGTACGAGATTTGGATAAGTGAGCCGAAAAGCGTTAAGGAGAGAAGGGAAACTTTTTTCCGCCGTCTCGGTTTTCTTGATGAGATGGGATTGGATAGGATTGTAGAGTGTAGTGGAGCTGTCTCGAGTTCTTGCATAGAGAAGGATGTGGATTTTTGCTCCAGGGAATTGGATGGTGAAGCCAATTGCATGGTTGATGAGTTGGACCGACACTGTTTGGATGGCGGGAAAGTAGCTCCCAAGGGGGAAAATGCAGGACATATTCTTCCTGATGAACAAGCCGAGGCTCATGGTGATGAGTGCAAGAATGTCGATTTGGATGAGAAGAAAGTGAGGAGTTGGTGGAAGAGCTTCAAGAACAAGATGAGAAAAAATAAAGGGAAAGATTTGTCAAGAGTTAGGAGAATTAAGGTGTGTCAAAAGAAGAAGAGTTACACGGAGTTGAGTTCGGTTTATAATATACAAGAATTTCGTGCTCATAAAGGCCTACTTTGGACAATGAAATTTAGCCCCGATGGCCAGTATCTGGCCAGTGGCGGCGAAGATGGGGTAGTACGCATCTGGCAGGTGACATTGTCAGATGCTGTGTGCTGCAGTTCTTCTGATAAATCCGATTTTGGAATGAAAAAGTCATCTTATGCTTCAGTCGTTATTCCTAATAAGGTTTTCAACATTGAAGAGCTCCCGCAGCATGAGTTTTTTGGTCATACCAGCGATGTCTTGGATCTTGCTTGGTCCAATTCTAATTGTTTGCTTTCATCATCCAAGGATAACACAGTTCGTTTGTGGCAAGTGGGAAGCGAGAAGTGTCTTGGTGTTTTCCCCCACAATAATTATGTGACTTGCGTACAGTTCAGTCCCGTTGATGAGAACTACTTCATAAGTGGCTCCATAGATGGAAAAGTTCGAATTTGGAGCACATCAGGAGGACGTGTAGTTGATTGGGTTGATGCTCGAGATGTTGTAACCGCTATTTGTTACCAACCAAACGGAAAAGGGTTTGTAGTTGGTTCCCTTGGTGGCAGTTGTCACTTCTACGAAACATCATCAGGCAATGAACTGGTGCTTAATGCGGAGATACATTTTACTCGGCGAAATAAATCCAATGGTCACAAAATTACTGGTATTCAATTTTTAGAAGAAGGATCACAAATGGTTATGGTAACATCAAGGGACTCAAAAATTCATATACTTGATGGGATCGATGATGTCCGCAGATACAAAGGTCTTCCAAACTCGGGAAGTCAAATGTCGGCTTCATTTACTTCAAATCGAAGACACATTGTATCGGTTGGTGAAGATTCTCGCGTTTATTTGTGGGATTATGACGATCATTTCTCATCATCCAAACGAGAAAAAACTATACGTTCTTGCGAGACTTTCCACTGTGAAGGCATTTCTGTCGCGATACCTTGGCTGGGCATGGGAATGGAACAAAAATGCTTAGATTGTATAGAATCAAAAGACTGCGAGGATGAATCTTCTTCTTTTCAGGTTAAAGATTCGGACCGGTTTTCCTTGTCGAATTGTTTCTTTTTAGACGGGCCGAGTTGGGGGTCTGCCACTTGGCCAGAGGATAAACTTCCTTTGTGGGATGTCGCAGTAGAAGATAATAGAAACCAAAAATGTGGAATACTCTCCGCTGCGTGGAGTCTCGTGCTTGTGACGGGCGGGTTTGATGGAACTATTCGGACATTCCACAATTATGGGTTGCCCGTTAGGATTTAG

Network for GWHGAAZE016894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	188	223	3.10E-08
PF00400.33	WD40	264	298	2.10E-06
PF00400.33	WD40	304	341	3.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.041
	SRR3591706	second leaf	2.044
	SRR3591707	mature leaf	2.648
	SRR3591708	Shoot apex	1.607
	SRR3591709	Stem	4.057
	SRR3591710	White floral bud	0.399
	SRR3591711	White flower	0.461
	SRR3591712	Green floral bud	1.664
	SRR3591713	Yellow flower	1.634
SRP173429	SRR8316895	Juvenile bud stage	0.548
	SRR8316896	Juvenile bud stage	1.335
	SRR8316897	Juvenile bud stage	0.609
	SRR8316894	Third green stage	0.697
	SRR8316900	Third green stage	1.716
	SRR8316901	Third green stage	1.824
	SRR8316898	Complete white stage	0.311
	SRR8316899	Complete white stage	1.334
	SRR8316903	Complete white stage	0.626
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.142
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.593
	SRR8316907	Gold flowering stage	0.381
	SRR8316908	Gold flowering stage	0.276
SRP132670	SRR6706286	Control	1.455
	SRR6706287	Light intensity 50%	1.082
	SRR6706288	Light intensity 20%	1.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.319
	CNS0095593	Slightly white alabastrum(diploid) 2	0.826
	CNS0095594	Slightly white alabastrum(diploid) 3	0.637
	CNS0095595	Whole white alabastrum(diploid) 2	1.376
	CNS0095596	Whole white alabastrum(diploid) 3	1.096
	CNS0095597	Whole white alabastrum(diploid) 4	1.809
	CNS0095598	Silvery flower (diploied) 1	0.460
	CNS0095599	Silvery flower (diploied) 2	0.480
	CNS0095600	Silvery flower (diploied) 3	0.152
	CNS0095601	Golden flower (diploid) 1	0.290
	CNS0095602	Golden flower (diploid) 2	0.359
	CNS0095603	Golden flower (diploid) 3	0.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.091
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.258
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.031
	CNS0095610	Silvery flower (tetraploid) 1	0.409
	CNS0095611	Silvery flower (tetraploid) 2	0.209
	CNS0095612	Silvery flower (tetraploid) 3	0.160
	CNS0095613	Golden flower (tetraploid) 1	0.171
	CNS0095614	Golden flower (tetraploid) 2	0.015
	CNS0095615	Golden flower (tetraploid) 3	0.232
CRA001975	CRR073297	Stem 1	0.671
	CRR073298	Stem 2	0.791
	CRR073299	Stem 3	0.720
	CRR073300	Leaf 1	1.433
	CRR073301	Leaf 2	1.498
	CRR073302	Leaf 3	1.341
	CRR073303	Juvenile bud 1	0.752
	CRR073304	Juvenile bud 2	0.255
	CRR073305	Juvenile bud 3	0.565
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.114
	CRR073310	Second white 2	0.187
	CRR073311	Second white 3	0.193
	CRR073312	Silver flowering 1	0.131
	CRR073313	Silver flowering 2	0.295
	CRR073314	Silver flowering 3	0.394
	CRR073315	Gold flowering 1	1.143
	CRR073316	Gold flowering 2	0.969
	CRR073317	Gold flowering 3	0.136
	CRR073318	Tawny withering 1	1.588
	CRR073319	Tawny withering 2	0.769
	CRR073320	Tawny withering 3	1.252