Detail information of GWHGAAZE016901


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP26113.11.2968E-82hypothetical protein JCGZ_22214 [Jatropha curcas]
Swissprottr|Q6NQG7|ATL78_ARATH2E-68RING-H2 finger protein ATL78
trEMBLtr|A0A067JTG1|A0A067JTG1_JATCU5E-83Uncharacterized protein {ECO:0000313|EMBL:KDP26113.1}
TAIR10AT1G49230.12E-55RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8550527685505872+
GWHAAZE00000004mRNA8550527685505872+
GWHAAZE00000004exon8550527685505767+
GWHAAZE00000004exon8550579885505872+
GWHAAZE00000004CDS8550527685505767+
GWHAAZE00000004CDS8550579885505872+
Transcript Sequence

Network for GWHGAAZE016901

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2721151.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.017
SRR3591706second leaf0.000
SRR3591707mature leaf0.147
SRR3591708Shoot apex3.132
SRR3591709Stem3.055
SRR3591710White floral bud1.689
SRR3591711White flower0.254
SRR3591712Green floral bud3.119
SRR3591713Yellow flower0.018
SRP173429 SRR8316895Juvenile bud stage 1.225
SRR8316896Juvenile bud stage 0.358
SRR8316897Juvenile bud stage 1.039
SRR8316894Third green stage 0.311
SRR8316900Third green stage 0.906
SRR8316901Third green stage 0.192
SRR8316898Complete white stage 0.226
SRR8316899Complete white stage 5.712
SRR8316903Complete white stage 1.101
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.099
SRR8316905Silver flowering stage0.072
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.422
SRR8316908Gold flowering stage 0.634
SRP132670SRR6706286Control1.590
SRR6706287Light intensity 50%1.242
SRR6706288Light intensity 20%2.480
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.443
CNS0095593Slightly white alabastrum(diploid) 21.274
CNS0095594Slightly white alabastrum(diploid) 34.063
CNS0095595Whole white alabastrum(diploid) 22.106
CNS0095596Whole white alabastrum(diploid) 30.763
CNS0095597Whole white alabastrum(diploid) 41.135
CNS0095598Silvery flower (diploied) 15.254
CNS0095599Silvery flower (diploied) 22.083
CNS0095600Silvery flower (diploied) 31.017
CNS0095601Golden flower (diploid) 12.153
CNS0095602Golden flower (diploid) 20.568
CNS0095603Golden flower (diploid) 30.996
CNS0095604Slightly white alabastrum(tetraploid) 12.463
CNS0095605Slightly white alabastrum(tetraploid) 21.688
CNS0095606Slightly white alabastrum(tetraploid) 34.844
CNS0095607Whole white alabastrum(tetraploid) 11.328
CNS0095608Whole white alabastrum(tetraploid) 20.174
CNS0095609Whole white alabastrum(tetraploid) 30.349
CNS0095610Silvery flower (tetraploid) 10.034
CNS0095611Silvery flower (tetraploid) 20.582
CNS0095612Silvery flower (tetraploid) 31.720
CNS0095613Golden flower (tetraploid) 10.021
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.508
CRA001975CRR073297Stem 11.119
CRR073298Stem 21.527
CRR073299Stem 31.899
CRR073300Leaf 10.458
CRR073301Leaf 20.515
CRR073302Leaf 33.229
CRR073303Juvenile bud 12.009
CRR073304Juvenile bud 20.831
CRR073305Juvenile bud 31.245
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.762
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.123
CRR073316Gold flowering 22.561
CRR073317Gold flowering 32.420
CRR073318Tawny withering 126.539
CRR073319Tawny withering 254.794
CRR073320Tawny withering 315.886