Detail information of GWHGAAZE016904


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU43489.10hypothetical protein MIMGU_mgv1a006980mg [Erythranthe guttata]
Swissprottr|Q9LVW7|CARA_ARATH0Carbamoyl-phosphate synthase small chain, chloroplastic (Precursor)
trEMBLtr|A0A022RTW0|A0A022RTW0_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU43489.1}
TAIR10AT3G27740.10carbamoyl phosphate synthetase A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8558203185592812-
GWHAAZE00000004mRNA8558203185592812-
GWHAAZE00000004exon8558203185582072-
GWHAAZE00000004exon8558215385582199-
GWHAAZE00000004exon8558230885582410-
GWHAAZE00000004exon8558247785582520-
GWHAAZE00000004exon8558360585583770-
GWHAAZE00000004exon8558714385587490-
GWHAAZE00000004exon8558793385588042-
GWHAAZE00000004exon8558839885588526-
GWHAAZE00000004exon8558864285588709-
GWHAAZE00000004exon8558927685589336-
GWHAAZE00000004exon8558942485589512-
GWHAAZE00000004exon8559131985591451-
GWHAAZE00000004exon8559268685592812-
GWHAAZE00000004CDS8559268685592812-
GWHAAZE00000004CDS8559131985591451-
GWHAAZE00000004CDS8558942485589512-
GWHAAZE00000004CDS8558927685589336-
GWHAAZE00000004CDS8558864285588709-
GWHAAZE00000004CDS8558839885588526-
GWHAAZE00000004CDS8558793385588042-
GWHAAZE00000004CDS8558714385587490-
GWHAAZE00000004CDS8558360585583770-
GWHAAZE00000004CDS8558247785582520-
GWHAAZE00000004CDS8558230885582410-
GWHAAZE00000004CDS8558215385582199-
GWHAAZE00000004CDS8558203185582072-
Transcript Sequence

Network for GWHGAAZE016904

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00988.23CPSase_sm_chain541806.80E-48
PF00117.29GATase2434173.30E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01956carA, CPA1 Metabolic pathways map01100
Pyrimidine metabolismmap00240
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
GO:0006541biological_processglutamine metabolic process
GO:0004088molecular_functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.328
SRR3591706second leaf35.775
SRR3591707mature leaf28.605
SRR3591708Shoot apex63.620
SRR3591709Stem31.730
SRR3591710White floral bud27.959
SRR3591711White flower35.389
SRR3591712Green floral bud45.864
SRR3591713Yellow flower26.810
SRP173429 SRR8316895Juvenile bud stage 36.992
SRR8316896Juvenile bud stage 46.865
SRR8316897Juvenile bud stage 24.559
SRR8316894Third green stage 17.791
SRR8316900Third green stage 54.063
SRR8316901Third green stage 49.308
SRR8316898Complete white stage 12.433
SRR8316899Complete white stage 59.590
SRR8316903Complete white stage 21.066
SRR8316902Silver flowering stage10.871
SRR8316904Silver flowering stage14.661
SRR8316905Silver flowering stage6.778
SRR8316906Gold flowering stage 20.084
SRR8316907Gold flowering stage 17.911
SRR8316908Gold flowering stage 22.168
SRP132670SRR6706286Control24.157
SRR6706287Light intensity 50%23.447
SRR6706288Light intensity 20%27.893
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.744
CNS0095593Slightly white alabastrum(diploid) 243.896
CNS0095594Slightly white alabastrum(diploid) 344.491
CNS0095595Whole white alabastrum(diploid) 237.680
CNS0095596Whole white alabastrum(diploid) 336.092
CNS0095597Whole white alabastrum(diploid) 426.445
CNS0095598Silvery flower (diploied) 144.431
CNS0095599Silvery flower (diploied) 237.833
CNS0095600Silvery flower (diploied) 337.567
CNS0095601Golden flower (diploid) 141.649
CNS0095602Golden flower (diploid) 240.366
CNS0095603Golden flower (diploid) 339.649
CNS0095604Slightly white alabastrum(tetraploid) 143.268
CNS0095605Slightly white alabastrum(tetraploid) 238.346
CNS0095606Slightly white alabastrum(tetraploid) 363.365
CNS0095607Whole white alabastrum(tetraploid) 120.875
CNS0095608Whole white alabastrum(tetraploid) 217.571
CNS0095609Whole white alabastrum(tetraploid) 347.280
CNS0095610Silvery flower (tetraploid) 129.086
CNS0095611Silvery flower (tetraploid) 236.880
CNS0095612Silvery flower (tetraploid) 323.832
CNS0095613Golden flower (tetraploid) 116.114
CNS0095614Golden flower (tetraploid) 227.761
CNS0095615Golden flower (tetraploid) 315.482
CRA001975CRR073297Stem 150.494
CRR073298Stem 245.889
CRR073299Stem 343.557
CRR073300Leaf 143.375
CRR073301Leaf 243.286
CRR073302Leaf 336.248
CRR073303Juvenile bud 134.205
CRR073304Juvenile bud 224.960
CRR073305Juvenile bud 335.894
CRR073306Third green 16.982
CRR073307Third green 27.984
CRR073308Third green 38.265
CRR073309Second white 110.225
CRR073310Second white 29.170
CRR073311Second white 311.934
CRR073312Silver flowering 111.668
CRR073313Silver flowering 210.354
CRR073314Silver flowering 310.404
CRR073315Gold flowering 122.357
CRR073316Gold flowering 232.272
CRR073317Gold flowering 323.347
CRR073318Tawny withering 131.303
CRR073319Tawny withering 229.269
CRR073320Tawny withering 342.629