Gene detail

Detail information of GWHGAAZE016922

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12864.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	1E-151	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|A0A068UX77\|A0A068UX77_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_71 {ECO:0000313\|EMBL:CDP12864.1}
TAIR10	AT1G53050.1	5E-121	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86119579	86128671	-
GWHAAZE00000004	mRNA	86119579	86128671	-
GWHAAZE00000004	exon	86119579	86119926	-
GWHAAZE00000004	exon	86120840	86120936	-
GWHAAZE00000004	exon	86121128	86121240	-
GWHAAZE00000004	exon	86123250	86123471	-
GWHAAZE00000004	exon	86124404	86124721	-
GWHAAZE00000004	exon	86126391	86126675	-
GWHAAZE00000004	exon	86128306	86128671	-
GWHAAZE00000004	CDS	86128306	86128671	-
GWHAAZE00000004	CDS	86126391	86126675	-
GWHAAZE00000004	CDS	86124404	86124721	-
GWHAAZE00000004	CDS	86123250	86123471	-
GWHAAZE00000004	CDS	86121128	86121240	-
GWHAAZE00000004	CDS	86120840	86120936	-
GWHAAZE00000004	CDS	86119579	86119926	-

Transcript Sequence
>GWHTAAZE016942 ATGGGTTGTGTTCAAGCTAAAGGGGGAACCTACACTCCCCCCAGAGGAGGACTTGATAAGTTGAAATTGGATAATGGTTATGTTAAAGGTGGCAGTAATGGTAGACCCATTACTCATAAACCACCATTGAAGGACAGTGGTGGTGGTAATGGGAGTGGGGAGAGGAAGATCAGTAAGGAAGGAGAGAGGGGGATTAATGGGGTTGGGAATGTTTCTCAGAGGATTTCAACTAAGAAAATTGGCGCAGATGAACTGGTTGATGGTTGGCCTAAGTGGCTTGTTGAAAATATTTCTAGTGATGTTTTGGCTGGTTTGGTTCCTAAGAGTGCTGATTCTTATGATAAGCTTGCTAAGGTGGGTGGGTATGTTGGACAGGGAACATATAGCAATGTGTATAAAGCTCGAGATAGGGACACTGGAAAGATTGTTGCCTTAAAGAAGGTGCGATTCGACACATCAGAGCCAGAGAGTGTGAAATTTATGGCTAGAGAGATAATCATACTACAAAGGCTAGATCATCCCAATATTATTAAACTTGAAGGACTGGCTACATCAAGAATGCAATATAGTCTTTATTTGGTCTTCGATTTTATGCAGACGGACTTAACCAAAGTTATCTCTCGTCCCGAGGGAAGACTAACTGAACCACAGGTCAAGTGCTACATGCAGCAGTTGCTCTCAGGTCTCGAGCACTGCCACAAGAGAGGGATCTTACATAGGGACATAAAAGGGTCCAACTTGTTGATAGATAAAGATGGGATGCTAAAAATTGCAGATTTTGGGCTTGCAAATTTTTACGAACCTAAACAAAAGCGGCCTCTTACAAGCCGAGTTGTAACACTCTGGTATAGAGCTCCAGAGCTACTTTTGGGTTCTTCAGATTATGGAGTTGGCATTGATCTTTGGAGTGCAGGTTGTCTTTTGGCAGAGATGTTTATTGGAAAGCCAATTATGCCCGGTAGGACAGAGGTTGAGCAACTTCACAGAATTTTCAAGCTTTGTGGTTCACCCCCAGAGGATTATTGGAAAAAAATAAAGCCACCAACTACATTCAGACCACCACAAAATTACCAACCCAGTTTTCAAGAAGCCTTTACGAATTTCCCTCCTTCGCTGTTTGGTCTCTTGACCACGCTTCTAGCTCTCGATGGATCATTTCGTGGTACTGCTACTTCTGCTCTCCAAGCTGAATTCTTTACTTCGAGTCCATTAGCATGCGATCTTTCAGGTCTGCCCGCAATGAACAAAGAAGTGGATTTGCCAAGTCAATACAATGATCGTAAGAAGTATGTTATCTCTCTCAGGAAAACAAATCAATGGTCCCTGAAAAATCGTGAAGGTCTCGGAAGTTTAATCTCTGGCATCAAAAGAGGCAAAGAAGATCTGGGATCTCCTAAAGGGCGGGAAAACAATGTAGAGCCAAATAGCCAACAGATGGCTAACAGTGCCAGTAGCAGCTCCTCGAGTAAAAAAACAAGCAGGAATCAAGAAGAAAGCCCACCTCGTACCCCTTCTCCCTCTTTTCATTTGAATCGAAATCGCTCGGCAAGAACTGAAGCGCATCCCAATGCATTGAAGAACATCAAGAATTTCCCCCTCTTGCTTGCCTCTATAACCGAGACGGTCAATCATTTTGAGGACAACAGACTGAGGATGATGCCTCTCAGGTCAAGGTCAACGGTTGACTTTCGACAACTTGACATGGAAAAGTTGTCAAAGCTTTTTGGCAACATGGAAGAAGATCACTAG

Network for GWHGAAZE016922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	121	399	7.10E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.372
	SRR3591706	second leaf	0.933
	SRR3591707	mature leaf	0.093
	SRR3591708	Shoot apex	1.553
	SRR3591709	Stem	1.625
	SRR3591710	White floral bud	0.746
	SRR3591711	White flower	0.229
	SRR3591712	Green floral bud	1.529
	SRR3591713	Yellow flower	0.238
SRP173429	SRR8316895	Juvenile bud stage	1.966
	SRR8316896	Juvenile bud stage	2.456
	SRR8316897	Juvenile bud stage	1.448
	SRR8316894	Third green stage	0.709
	SRR8316900	Third green stage	2.639
	SRR8316901	Third green stage	1.586
	SRR8316898	Complete white stage	0.676
	SRR8316899	Complete white stage	2.873
	SRR8316903	Complete white stage	1.285
	SRR8316902	Silver flowering stage	0.040
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.164
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	1.212
	SRR6706287	Light intensity 50%	1.409
	SRR6706288	Light intensity 20%	1.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.900
	CNS0095593	Slightly white alabastrum(diploid) 2	2.963
	CNS0095594	Slightly white alabastrum(diploid) 3	1.483
	CNS0095595	Whole white alabastrum(diploid) 2	1.863
	CNS0095596	Whole white alabastrum(diploid) 3	1.726
	CNS0095597	Whole white alabastrum(diploid) 4	2.218
	CNS0095598	Silvery flower (diploied) 1	0.332
	CNS0095599	Silvery flower (diploied) 2	1.037
	CNS0095600	Silvery flower (diploied) 3	0.396
	CNS0095601	Golden flower (diploid) 1	0.438
	CNS0095602	Golden flower (diploid) 2	0.305
	CNS0095603	Golden flower (diploid) 3	0.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.502
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.322
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.489
	CNS0095610	Silvery flower (tetraploid) 1	0.070
	CNS0095611	Silvery flower (tetraploid) 2	0.223
	CNS0095612	Silvery flower (tetraploid) 3	0.410
	CNS0095613	Golden flower (tetraploid) 1	0.122
	CNS0095614	Golden flower (tetraploid) 2	0.105
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.304
	CRR073298	Stem 2	1.733
	CRR073299	Stem 3	1.851
	CRR073300	Leaf 1	2.767
	CRR073301	Leaf 2	3.316
	CRR073302	Leaf 3	1.191
	CRR073303	Juvenile bud 1	2.293
	CRR073304	Juvenile bud 2	0.845
	CRR073305	Juvenile bud 3	2.650
	CRR073306	Third green 1	0.480
	CRR073307	Third green 2	0.403
	CRR073308	Third green 3	0.680
	CRR073309	Second white 1	0.125
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.150
	CRR073316	Gold flowering 2	0.402
	CRR073317	Gold flowering 3	0.212
	CRR073318	Tawny withering 1	0.722
	CRR073319	Tawny withering 2	1.561
	CRR073320	Tawny withering 3	0.451