Gene detail

Detail information of GWHGAAZE016934

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093640.1	2.1273E-147	PREDICTED: 54S ribosomal protein L10, mitochondrial [Sesamum indicum]
Swissprot	tr\|P25873\|RK15_ARATH	1E-13	50S ribosomal protein L15, chloroplastic (Precursor)
trEMBL	tr\|D7TM44\|D7TM44_VITVI	1E-147	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31411.3}
TAIR10	AT5G64670.1	2E-85	Ribosomal protein L18e/L15 superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86493267	86498476	+
GWHAAZE00000004	mRNA	86493267	86498476	+
GWHAAZE00000004	exon	86493267	86493653	+
GWHAAZE00000004	exon	86496347	86496430	+
GWHAAZE00000004	exon	86496532	86496621	+
GWHAAZE00000004	exon	86498213	86498476	+
GWHAAZE00000004	CDS	86493267	86493653	+
GWHAAZE00000004	CDS	86496347	86496430	+
GWHAAZE00000004	CDS	86496532	86496621	+
GWHAAZE00000004	CDS	86498213	86498476	+

Transcript Sequence
>GWHTAAZE016954 ATGTTGAGAAGAACACTATCCACACTCATCTCAACATCACCAATCCACAATGCCTCCAGATCAATCCTCCCACAATTCACCCCCCAAAAATTCCCCTCCCATTTTCCCTCTAACCCAAACCCTAATTTAAGTGGATTTGTTCGGAACATCAGGGCTTACAGTAGTCTTTTGATGTTGAATGATTTGAGAGATAACAAGGGGGCTAGGAAGCAAAAGACGAGAAAGGGACGAGGGATTGGTTCGGGTAAAGGAAAAACTGCGGGAAGAGGACATAAGGGACAGAAGGCTAGAGGTACCCACAAGTTTGGTTTCGAAGGCGGTCAGACTCCACTTCGAAGACGATTGCCCAAACGAGGGTTTCATAATCCTTTTAGCCTCACATTTCAGCCTGTGGGGTTAGGAAAGATTGCAAAACTTATAAATGCAGGAAAGATAGACTCTTCAGAGCTGATCACTATGAAGACTCTCAAGGAGACGGGAGCAATAGGGAAGCAAATAAGGGATGGGGTTAGATTGATGGGACGCGGTGCTGAACATATACAGTGGCCAATTCATCTTGAGGTTTCAAGGGTGACGGTTAGAGCAAAGGAAGCGGTTGAAGCTGCAGGCGGGTCAGTCCGCAGAGTTTATTACAATAAATTAGGGTTTCGGGCACTTCTTAAGCCAGAGTGGTTCGAGAAAAAGGGCCGGTTACTTCCACGAGCTGCAAGACCACCACCAAAACAGAAAGACAAGGTGGACAGCATCGGGCGCCTGCCTGCTCCAACCAAGCCAATTCCTTTTACGGCAGAGGAGAAAGAGGCAATGTCGGCTCCATCTTCCTAG

Network for GWHGAAZE016934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00828.20	Ribosomal_L27A	83	206	7.30E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02876	RP-L15, MRPL15, rplO	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.350
	SRR3591706	second leaf	28.731
	SRR3591707	mature leaf	23.652
	SRR3591708	Shoot apex	46.801
	SRR3591709	Stem	19.230
	SRR3591710	White floral bud	37.809
	SRR3591711	White flower	54.399
	SRR3591712	Green floral bud	38.744
	SRR3591713	Yellow flower	43.090
SRP173429	SRR8316895	Juvenile bud stage	39.554
	SRR8316896	Juvenile bud stage	50.000
	SRR8316897	Juvenile bud stage	28.638
	SRR8316894	Third green stage	14.413
	SRR8316900	Third green stage	44.384
	SRR8316901	Third green stage	46.714
	SRR8316898	Complete white stage	12.863
	SRR8316899	Complete white stage	39.251
	SRR8316903	Complete white stage	24.405
	SRR8316902	Silver flowering stage	25.266
	SRR8316904	Silver flowering stage	26.516
	SRR8316905	Silver flowering stage	16.635
	SRR8316906	Gold flowering stage	39.681
	SRR8316907	Gold flowering stage	45.725
	SRR8316908	Gold flowering stage	46.762
SRP132670	SRR6706286	Control	45.468
	SRR6706287	Light intensity 50%	45.892
	SRR6706288	Light intensity 20%	45.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.890
	CNS0095593	Slightly white alabastrum(diploid) 2	55.151
	CNS0095594	Slightly white alabastrum(diploid) 3	50.302
	CNS0095595	Whole white alabastrum(diploid) 2	37.713
	CNS0095596	Whole white alabastrum(diploid) 3	39.434
	CNS0095597	Whole white alabastrum(diploid) 4	25.273
	CNS0095598	Silvery flower (diploied) 1	45.495
	CNS0095599	Silvery flower (diploied) 2	41.401
	CNS0095600	Silvery flower (diploied) 3	30.757
	CNS0095601	Golden flower (diploid) 1	32.863
	CNS0095602	Golden flower (diploid) 2	26.641
	CNS0095603	Golden flower (diploid) 3	28.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.876
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.559
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.657
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.389
	CNS0095610	Silvery flower (tetraploid) 1	39.590
	CNS0095611	Silvery flower (tetraploid) 2	31.918
	CNS0095612	Silvery flower (tetraploid) 3	24.125
	CNS0095613	Golden flower (tetraploid) 1	36.186
	CNS0095614	Golden flower (tetraploid) 2	38.838
	CNS0095615	Golden flower (tetraploid) 3	25.453
CRA001975	CRR073297	Stem 1	24.788
	CRR073298	Stem 2	27.021
	CRR073299	Stem 3	27.651
	CRR073300	Leaf 1	21.726
	CRR073301	Leaf 2	23.227
	CRR073302	Leaf 3	24.012
	CRR073303	Juvenile bud 1	19.117
	CRR073304	Juvenile bud 2	14.335
	CRR073305	Juvenile bud 3	19.369
	CRR073306	Third green 1	15.908
	CRR073307	Third green 2	17.968
	CRR073308	Third green 3	18.183
	CRR073309	Second white 1	14.623
	CRR073310	Second white 2	12.345
	CRR073311	Second white 3	13.781
	CRR073312	Silver flowering 1	14.979
	CRR073313	Silver flowering 2	13.589
	CRR073314	Silver flowering 3	16.544
	CRR073315	Gold flowering 1	8.920
	CRR073316	Gold flowering 2	18.328
	CRR073317	Gold flowering 3	10.352
	CRR073318	Tawny withering 1	13.943
	CRR073319	Tawny withering 2	24.333
	CRR073320	Tawny withering 3	20.629