Gene detail

Detail information of GWHGAAZE016944

Functional Annotation

Database	Orthologs	Annotation
Nr	ACB56939.1	mannitol transporter [Artemisia annua]
Swissprot	tr\|Q8VZ80\|PLT5_ARATH	Polyol transporter 5
trEMBL	tr\|B2D0J3\|B2D0J3_ARTAN	Mannitol transporter {ECO:0000313\|EMBL:ACB56939.1}
TAIR10	AT3G18830.1	polyol/monosaccharide transporter 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87035298	87038343	-
GWHAAZE00000004	mRNA	87035298	87038343	-
GWHAAZE00000004	exon	87035298	87035890	-
GWHAAZE00000004	exon	87036223	87036672	-
GWHAAZE00000004	exon	87037217	87037579	-
GWHAAZE00000004	exon	87038172	87038343	-
GWHAAZE00000004	CDS	87038172	87038343	-
GWHAAZE00000004	CDS	87037217	87037579	-
GWHAAZE00000004	CDS	87036223	87036672	-
GWHAAZE00000004	CDS	87035298	87035890	-

Transcript Sequence
>GWHTAAZE016964 ATGGTTGACCGGAAACTAGAAGAGAACAGTGGTATCTCCGGCGAACCCAAGGAACGAATAATAATCTCGTCGGGATTGGAAAGTAGTACTCCAAAAATGAGACCCAAAAGAAACAAGTATGCTTTTGGTTGCTCCATTTTAGCTTCTATGGCTTGTGTCTTACTTGGTTATGATATTGGAGTGATGAGTGGAGCAGTTATCTACATTAAAAAAGACCTCAAAGTCTCTGACGTACAGATTGAGATTCTCGTTGGGATAATAAACCTCTACTCCCTCATCGGAGCAGCTGCTGCCGGCCGTACCTCCGACTGGGCCGGGCGGAGGTGGACTATTGTAGTCGCCGCTGGAATATTCTTTGCCGGCGCACTCTTGATGGGCTTTGCCACTGACTACGTGTTCCTTATGGTCGGACGGTTTGTTACTGGAATCGGAGTTGGATATGCGATGATGATCTCTCCTGTGTATACTGCAGAGATCTCGCCGGCTTCATCTCGCGGATTCCTGACATCTTTCTCCGAAGTCTTCATTAACGTAGGCATAGTACTCGGTTATGTATCAAACTATGCTTTCTCAAAGCTTCCAATTCATTTGGGCTGGCGATTTATGCTTGGAATAGGAACGATCCCTTCGATTTTCTTAGCAATAACTGTCATAGCCCTACCAGAATCTCCTCGTTGGCTCGTAATGCAAGGTCGCCTCAGTGACGCTAGGCATGTATTAGAGAAAACCTCCGATACCAAAGCCGAAGCTGAGCTAAGGCTCGGCGACATCAAAGCCGCCTGCGGCATACCAGAGAACTGCATTGACGACATTGTCCCAATCCCCAAACACAGTCAAGATGATGCTATATGGAGAAAACTCCTGATCCATCCCACACCGTCCGTTCGCCACATTCTGATCGCAGCCATCGGTGTACACTTCTTCCAGCAATCGAGTGGAATAGACGCTGTCATTTTGTACAGCCCGAGAATCTTTGAGAAAGCAGGTATAACAAACGACACGAAGAAGCTACTCTTCACCGTAGCCGTTGGAGCCACCAAGACATGTTTCATCTTGGTGGCTGCGTTCTTTTTGGACAAGATCGGACAGCGGCCGTTGCTTCTATCCAGTGTAGGTGGGATGATCATGTCCCTGACGTTGTTAGGGGTAGGGTTGACAGTTATTGACCAATATGATGGAAAGGTGATCTGGGCCGTTGCTTTAGCGATAGCAGGAGTGTTATCATTCGTTGGATTCTTTTCAATTGGTTTGGGGCCCATTACGCCCATTTACACAGCGGAGATTTTTCCGCTGAGGCTGCGGGCGCAGGCGTTCAGTGTAGGAGTGGCAGTGAGTAGGGTGACAAGCGGGGTCATATCAATGACCTTTATATCTTTGTATAAGGGAATTACAATAGGGGGAGCCTTCTTTTTGTTTGCGGGGATTGCATCGTTGGCGTTGGTGTTCTTTTATACGGTGCTCCCTGAAACACGGGGGAAGAACTTGGAGGAGGTGGAGGCATTGTTTGGTAACAATTTTATTTGGAGGTCAGGGAATTTGAAGAAAAGGGAGGAGGCGGAGAGGAATGGGCAAATCTAG

Network for GWHGAAZE016944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00083.25	Sugar_tr	45	502	3.20E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.291
	SRR3591707	mature leaf	0.368
	SRR3591708	Shoot apex	0.117
	SRR3591709	Stem	0.104
	SRR3591710	White floral bud	18.481
	SRR3591711	White flower	17.802
	SRR3591712	Green floral bud	3.610
	SRR3591713	Yellow flower	0.428
SRP173429	SRR8316895	Juvenile bud stage	2.940
	SRR8316896	Juvenile bud stage	0.240
	SRR8316897	Juvenile bud stage	0.209
	SRR8316894	Third green stage	1.899
	SRR8316900	Third green stage	2.108
	SRR8316901	Third green stage	3.316
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	13.922
	SRR8316903	Complete white stage	3.598
	SRR8316902	Silver flowering stage	0.023
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.105
	SRR6706287	Light intensity 50%	1.210
	SRR6706288	Light intensity 20%	1.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.710
	CNS0095593	Slightly white alabastrum(diploid) 2	5.190
	CNS0095594	Slightly white alabastrum(diploid) 3	6.501
	CNS0095595	Whole white alabastrum(diploid) 2	5.327
	CNS0095596	Whole white alabastrum(diploid) 3	4.244
	CNS0095597	Whole white alabastrum(diploid) 4	3.068
	CNS0095598	Silvery flower (diploied) 1	6.570
	CNS0095599	Silvery flower (diploied) 2	2.331
	CNS0095600	Silvery flower (diploied) 3	5.418
	CNS0095601	Golden flower (diploid) 1	6.772
	CNS0095602	Golden flower (diploid) 2	12.922
	CNS0095603	Golden flower (diploid) 3	10.863
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.019
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.210
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.079
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.543
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.182
	CNS0095610	Silvery flower (tetraploid) 1	0.503
	CNS0095611	Silvery flower (tetraploid) 2	5.155
	CNS0095612	Silvery flower (tetraploid) 3	1.374
	CNS0095613	Golden flower (tetraploid) 1	0.919
	CNS0095614	Golden flower (tetraploid) 2	0.575
	CNS0095615	Golden flower (tetraploid) 3	0.997
CRA001975	CRR073297	Stem 1	0.265
	CRR073298	Stem 2	0.175
	CRR073299	Stem 3	0.048
	CRR073300	Leaf 1	0.732
	CRR073301	Leaf 2	1.809
	CRR073302	Leaf 3	1.547
	CRR073303	Juvenile bud 1	0.339
	CRR073304	Juvenile bud 2	0.332
	CRR073305	Juvenile bud 3	0.210
	CRR073306	Third green 1	0.197
	CRR073307	Third green 2	0.112
	CRR073308	Third green 3	0.189
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.161
	CRR073314	Silver flowering 3	0.177
	CRR073315	Gold flowering 1	0.139
	CRR073316	Gold flowering 2	0.090
	CRR073317	Gold flowering 3	0.123
	CRR073318	Tawny withering 1	0.126
	CRR073319	Tawny withering 2	0.151
	CRR073320	Tawny withering 3	0.000