Gene detail

Detail information of GWHGAAZE016949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12901.1	6.7797E-174	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SJ04\|SKIP6_ARATH	5E-129	F-box/kelch-repeat protein SKIP6
trEMBL	tr\|A0A068UWU4\|A0A068UWU4_COFCA	3E-174	Coffea canephora DH200=94 genomic scaffold, scaffold_71 {ECO:0000313\|EMBL:CDP12901.1}
TAIR10	AT2G21950.1	3E-101	SKP1 interacting partner 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87442805	87443872	-
GWHAAZE00000004	mRNA	87442805	87443872	-
GWHAAZE00000004	exon	87442805	87443872	-
GWHAAZE00000004	CDS	87442805	87443872	-

Transcript Sequence
>GWHTAAZE016969 CCACAATCCAGCACCCAACTACCGCCACAGCTGATCCCAGACCTCCCATACGACGTCACACTCCAAATCATCGCCAGGGTCCCCAAATTCCACCACCCCACCCTCACTCTCGTCTCCAGATCATGGAGGTCCACCATACGCTCCCCACACCTCTTCCACACCCGATCCCTCCTCCACTGCACCCAACCCTCCCTCTACCTCAACATCCGCATCAACTCCTCCTTCACCTGGTACACACTCAATCAAAACCCTACAAACCCTAATCCAATTATCTCTCTCCTCCCTCCCATCCCGTGCCAACCAATTGGGTCCGCATTTGCCGTTGTGGGTCACAAAATTTATGTCATTGGAGGTTCTGTTAATGAAATTCCTTCGAATAATGTCTGGGTTTATGATTGCCGATGCAATAGGTGGGAAACTGGGCCGAGAATGAGAGTGGGGAGGGAATTTGCGGCTGCTGGGGTTGTGAATGGGAAGATTTATGTGATGGGTGGGTGTTTGATTGACAATTGGGCGAGATCGATGAACTGGGCTGAGGTTTTCGATCCAGTTGATGGATCGTGGAGTGCATTGCCGAGCTTAATTGATGTTAGGGATAAGTGGATGCACGCGAGTGCGGTTATGGATGGGAAGATTTACGCAATGGCGGATAGGGGTGGGGTTGTTTATGATGCCGTGGGAGAGAAGTGGGGTGGGGTGGCAAAGAGGCTGGATTTGGGGTGGAGGGGGCGGGGGGCTGTGGTGGAGGGGGTGTTGTATTGCTATGACTATTTGGGTAAGATTAGAGGGTATGATTTTGAGGGGGATGTTTGGAAGGAGTTGAGAGGGGTGGAGAAGGGTTTGCCGAAGTTCTTGTGCGGTGCGACGATGGTGAATGTTGGGGGGAGGTTGTGTGTGGTGTGGGAGAGGAGTGGGGGTGGGAAAGTGGTGGAGATTATGTGTGCGGAGATTGAGGTTTCGAAGGAGGGTGAAAATGGGGGATTGAGGGGGGAAATTGTTTGGTGTGGTGTGATTCTTGAAGTTCCTAAGGGGTCTGCAATTGTGCATTGTTTGGCTGTTGATTTGTGA

Network for GWHGAAZE016949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	56	6.10E-06
PF01344.26	Kelch_1	104	145	4.40E-14
PF01344.26	Kelch_1	150	194	4.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.814
	SRR3591706	second leaf	2.042
	SRR3591707	mature leaf	2.177
	SRR3591708	Shoot apex	1.687
	SRR3591709	Stem	3.442
	SRR3591710	White floral bud	3.080
	SRR3591711	White flower	2.273
	SRR3591712	Green floral bud	3.084
	SRR3591713	Yellow flower	1.747
SRP173429	SRR8316895	Juvenile bud stage	2.523
	SRR8316896	Juvenile bud stage	4.102
	SRR8316897	Juvenile bud stage	1.698
	SRR8316894	Third green stage	1.756
	SRR8316900	Third green stage	5.788
	SRR8316901	Third green stage	5.408
	SRR8316898	Complete white stage	2.539
	SRR8316899	Complete white stage	7.384
	SRR8316903	Complete white stage	3.591
	SRR8316902	Silver flowering stage	1.822
	SRR8316904	Silver flowering stage	2.362
	SRR8316905	Silver flowering stage	1.643
	SRR8316906	Gold flowering stage	5.752
	SRR8316907	Gold flowering stage	3.043
	SRR8316908	Gold flowering stage	3.227
SRP132670	SRR6706286	Control	11.460
	SRR6706287	Light intensity 50%	13.626
	SRR6706288	Light intensity 20%	13.157
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.196
	CNS0095593	Slightly white alabastrum(diploid) 2	2.552
	CNS0095594	Slightly white alabastrum(diploid) 3	3.391
	CNS0095595	Whole white alabastrum(diploid) 2	3.727
	CNS0095596	Whole white alabastrum(diploid) 3	2.838
	CNS0095597	Whole white alabastrum(diploid) 4	2.960
	CNS0095598	Silvery flower (diploied) 1	4.539
	CNS0095599	Silvery flower (diploied) 2	2.823
	CNS0095600	Silvery flower (diploied) 3	4.499
	CNS0095601	Golden flower (diploid) 1	2.223
	CNS0095602	Golden flower (diploid) 2	4.433
	CNS0095603	Golden flower (diploid) 3	4.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.575
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.469
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.420
	CNS0095610	Silvery flower (tetraploid) 1	8.209
	CNS0095611	Silvery flower (tetraploid) 2	8.401
	CNS0095612	Silvery flower (tetraploid) 3	6.050
	CNS0095613	Golden flower (tetraploid) 1	5.067
	CNS0095614	Golden flower (tetraploid) 2	7.010
	CNS0095615	Golden flower (tetraploid) 3	5.731
CRA001975	CRR073297	Stem 1	5.321
	CRR073298	Stem 2	5.925
	CRR073299	Stem 3	8.991
	CRR073300	Leaf 1	5.977
	CRR073301	Leaf 2	5.998
	CRR073302	Leaf 3	5.952
	CRR073303	Juvenile bud 1	6.317
	CRR073304	Juvenile bud 2	4.852
	CRR073305	Juvenile bud 3	5.783
	CRR073306	Third green 1	1.773
	CRR073307	Third green 2	1.538
	CRR073308	Third green 3	1.473
	CRR073309	Second white 1	2.647
	CRR073310	Second white 2	2.816
	CRR073311	Second white 3	2.734
	CRR073312	Silver flowering 1	1.475
	CRR073313	Silver flowering 2	0.539
	CRR073314	Silver flowering 3	0.976
	CRR073315	Gold flowering 1	1.724
	CRR073316	Gold flowering 2	1.882
	CRR073317	Gold flowering 3	2.688
	CRR073318	Tawny withering 1	4.181
	CRR073319	Tawny withering 2	0.851
	CRR073320	Tawny withering 3	5.411