Gene detail

Detail information of GWHGAAZE016955

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009781308.1	PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q06801\|DPEP_SOLTU	4-alpha-glucanotransferase, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|M5WRQ1\|M5WRQ1_PRUPE	4-alpha-glucanotransferase {ECO:0000256\|RuleBase:RU361207}
TAIR10	AT5G64860.1	disproportionating enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87704823	87721057	-
GWHAAZE00000004	mRNA	87704823	87721057	-
GWHAAZE00000004	exon	87720851	87721057	-
GWHAAZE00000004	exon	87719778	87719840	-
GWHAAZE00000004	exon	87719078	87719166	-
GWHAAZE00000004	exon	87718923	87718983	-
GWHAAZE00000004	exon	87717417	87717495	-
GWHAAZE00000004	exon	87710558	87710694	-
GWHAAZE00000004	exon	87710280	87710438	-
GWHAAZE00000004	exon	87710092	87710168	-
GWHAAZE00000004	exon	87709194	87709333	-
GWHAAZE00000004	exon	87709076	87709107	-
GWHAAZE00000004	exon	87708915	87708989	-
GWHAAZE00000004	exon	87707420	87707492	-
GWHAAZE00000004	exon	87706977	87707065	-
GWHAAZE00000004	exon	87705742	87705786	-
GWHAAZE00000004	exon	87705459	87705611	-
GWHAAZE00000004	exon	87704823	87704927	-
GWHAAZE00000004	CDS	87720851	87721057	-
GWHAAZE00000004	CDS	87719778	87719840	-
GWHAAZE00000004	CDS	87719078	87719166	-
GWHAAZE00000004	CDS	87718923	87718983	-
GWHAAZE00000004	CDS	87717417	87717495	-
GWHAAZE00000004	CDS	87710558	87710694	-
GWHAAZE00000004	CDS	87710280	87710438	-
GWHAAZE00000004	CDS	87710092	87710168	-
GWHAAZE00000004	CDS	87709194	87709333	-
GWHAAZE00000004	CDS	87709076	87709107	-
GWHAAZE00000004	CDS	87708915	87708989	-
GWHAAZE00000004	CDS	87707420	87707492	-
GWHAAZE00000004	CDS	87706977	87707065	-
GWHAAZE00000004	CDS	87705742	87705786	-
GWHAAZE00000004	CDS	87705459	87705611	-
GWHAAZE00000004	CDS	87704823	87704927	-

Transcript Sequence
>GWHTAAZE016975 ATGCAATTCCAAAACGCCACCGTTGGTGAGGATTTACCCGCAAACTACGCCGACTGGCTGCCGAAGACCGACGCCTGCAACCGGAGAAGAGCCGGCGTGCTCCTTCATCCGACGTCGTTTCCTGGACCGTATGGAATTGGAGATCTAGGTGATCAGGCCTTTCGCTTCATTGATTGGCTTCAGCAAGCTGGTTGCTCACTTTGGCAGGTTCTTCCTCTTGTTCCACCGGGAAGGAAGGGTGGTGAAGATGGGTCCCCCTATTCTGGCCAGGATGCCAATTGCGGTAACACCGGTTTGATCTCTCTTGATGAACTTGTAAAAGATGGCTTGTTGATGAAAGAAGAACTACCAAAACCACTAGATGCAGACCGAGTGAATTACTCAATTGCTGCTGACTTAAAGGATCCTTTGATAGCCAAGGCTGCAGAGAGGCTTGTTATGAGTGAAGGGAAACTCAAACGTGAGCTTGAAGAATTCCGTAAAGACCTCCATATTGCAAGTTGGCTTGAAGATGCTGCATATTTTGCTGCTATTGACGACTCATTAAATACATTCAGTTGGTATGATTGGCCCGAACCTTTAAAGAATCGGCATCTTGCGGCTTTGGAAGAAATTTACGAAAGCAAAAAGGATTTTGTCAACATATTTGTTGCGCAGCAGTTCTTATTCCAAAGGCAATGGCAAAAAGTTCATGATTATGCTAGGATGAAGGGGGTCAGTATAATGGGTGACATGCCTATTTATGTTGGTTATCACAGTGCAGATGTATGGGCAAATAAGAAACACTTTCTTCTGAATAGGAATGGGTTTCCTCTTCTAGTTAGTGGTGTACCCCCTGACGCCTTCAGCGAAACTGGTCAGCTTTGGGGAAGCCCACTATATGATTGGAATGCCATGGAGAAAGATGGATATTCCTGGTGGATAACGCGCCTACAACGTGCTCAGAATCTTTTCGATGAGTTCAGGATAGATCATTTTAGAGGATTTGCTGGCTATTGGGCTGTTCCTTCTGAGGCAAAGGTTGCTATGGTTGGAAGATGGAAGGTGGGACCTAGAGAGTCTTTATTCAATGCCATATTCAGATCTGTTGGAAAGATCAATATAATTGCAGAAGACTTGGGAGTTATAACTGAGGATGTAGTTCAGCTCAGGAAATCCATTGGAGCACCTGGAATGGCTGTCCTCCAGTTTGGTTTTGGAAGTGATGCCGAAAACCCTCACTTACCTCATAATCACAAGCCCAATCAAGTTGTATACACTGGGACGCATGATAATGATACGATTCGAGGTTGGTGGGATAACTTGCCACAACAAGAGAAGTCCAATGTACTAAACTATCTTTCAATTACTGAAGAAGAAGATATATCTTGGGCACTAATTCGGGCTTCGGTTGCCTCTATTGCCCAAACTACAATCATACCGATGCAGGATATTCTTGGGCTGGGGGGTTCTGCGAGGATGAATATTCCAGCAACTCAGTTTGGAAATTGGAGCTGGAGGCTACCTAGTACCATGAGCTTTGACAGCTTGAACACTGAAGCAAAGAAATTAAGGGATATGCTTTCAATGTATGGGCGGCTGTGA

Network for GWHGAAZE016955

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02446.18	Glyco_hydro_77	35	502	8.20E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00705	malQ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004134	molecular_function	4-alpha-glucanotransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.225
	SRR3591706	second leaf	33.087
	SRR3591707	mature leaf	30.423
	SRR3591708	Shoot apex	38.180
	SRR3591709	Stem	41.139
	SRR3591710	White floral bud	49.837
	SRR3591711	White flower	54.121
	SRR3591712	Green floral bud	44.564
	SRR3591713	Yellow flower	59.364
SRP173429	SRR8316895	Juvenile bud stage	27.335
	SRR8316896	Juvenile bud stage	36.339
	SRR8316897	Juvenile bud stage	16.251
	SRR8316894	Third green stage	15.432
	SRR8316900	Third green stage	50.650
	SRR8316901	Third green stage	41.579
	SRR8316898	Complete white stage	29.778
	SRR8316899	Complete white stage	68.710
	SRR8316903	Complete white stage	43.602
	SRR8316902	Silver flowering stage	28.509
	SRR8316904	Silver flowering stage	35.931
	SRR8316905	Silver flowering stage	21.170
	SRR8316906	Gold flowering stage	74.403
	SRR8316907	Gold flowering stage	69.239
	SRR8316908	Gold flowering stage	75.217
SRP132670	SRR6706286	Control	40.405
	SRR6706287	Light intensity 50%	45.117
	SRR6706288	Light intensity 20%	49.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.594
	CNS0095593	Slightly white alabastrum(diploid) 2	39.727
	CNS0095594	Slightly white alabastrum(diploid) 3	31.311
	CNS0095595	Whole white alabastrum(diploid) 2	31.909
	CNS0095596	Whole white alabastrum(diploid) 3	31.971
	CNS0095597	Whole white alabastrum(diploid) 4	33.251
	CNS0095598	Silvery flower (diploied) 1	37.521
	CNS0095599	Silvery flower (diploied) 2	40.981
	CNS0095600	Silvery flower (diploied) 3	71.882
	CNS0095601	Golden flower (diploid) 1	43.032
	CNS0095602	Golden flower (diploid) 2	64.915
	CNS0095603	Golden flower (diploid) 3	67.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.698
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.639
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.848
	CNS0095610	Silvery flower (tetraploid) 1	82.678
	CNS0095611	Silvery flower (tetraploid) 2	107.590
	CNS0095612	Silvery flower (tetraploid) 3	103.443
	CNS0095613	Golden flower (tetraploid) 1	57.054
	CNS0095614	Golden flower (tetraploid) 2	74.077
	CNS0095615	Golden flower (tetraploid) 3	73.225
CRA001975	CRR073297	Stem 1	50.058
	CRR073298	Stem 2	46.725
	CRR073299	Stem 3	47.664
	CRR073300	Leaf 1	62.689
	CRR073301	Leaf 2	57.501
	CRR073302	Leaf 3	50.684
	CRR073303	Juvenile bud 1	57.904
	CRR073304	Juvenile bud 2	55.606
	CRR073305	Juvenile bud 3	68.355
	CRR073306	Third green 1	48.864
	CRR073307	Third green 2	38.182
	CRR073308	Third green 3	42.550
	CRR073309	Second white 1	63.179
	CRR073310	Second white 2	57.239
	CRR073311	Second white 3	59.083
	CRR073312	Silver flowering 1	62.252
	CRR073313	Silver flowering 2	59.663
	CRR073314	Silver flowering 3	45.509
	CRR073315	Gold flowering 1	35.044
	CRR073316	Gold flowering 2	52.970
	CRR073317	Gold flowering 3	41.151
	CRR073318	Tawny withering 1	29.926
	CRR073319	Tawny withering 2	24.880
	CRR073320	Tawny withering 3	35.458