Gene detail

Detail information of GWHGAAZE016961

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21495.3	2.9696E-146	unnamed protein product [Vitis vinifera]
trEMBL	tr\|D7SW46\|D7SW46_VITVI	1E-146	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21495.3}
TAIR10	AT5G64950.1	5E-74	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87832817	87833902	+
GWHAAZE00000004	mRNA	87832817	87833902	+
GWHAAZE00000004	exon	87832817	87833902	+
GWHAAZE00000004	CDS	87832817	87833902	+

Transcript Sequence
>GWHTAAZE016981 CCTCCAACCCATTACTACTACTCCACTCTCAGCTCACCTTCACCTCCAATCCCAATCCGAAACCCTCAAATTCTCAATTACCTAATCAACTATCTAGGCTTTCCCAAACCCCAAGCTCTCTCTGTATCCAATCGCTTCCAATGGATCAAAACACCCCAAAAACCCCAATCCGTTGTCCAATTTTTCATAAACCTCGGATTCTCCGAAACCCAGATCCGCTCTTCGGCTAGAACCATGCCCCAAATCCTCTTTGCCGATGTCGAAAAAACCCTAAAACCCAAGCTGCATTTCTTTCAAGAATTGGGCCTCACTGGTTCTCATCTGGGTAAGTTCATTTCCAAGAATTCGAATTTGTTAACTTGTAGTTTGGATAGAAAATTGACGCCCCGCGTTGAAATTTTCAAGAAGATTCTTGGAAATGATAAAAACAATGAAGATCTAATGCGGGTACTACGGCGATCCAATGCAGTTGCCTCGAGATACCAGGAATCAAGATTGTTGAATAATATTTGTTATCTTGAAAGTTGTGGGATTGTTGGGTCACAATTAGCACTCTTGTTAAAGAGGCAACCTATGCTGTTTATTAAGCCAGAAAATGAACTTAAAGGCCTTGTTTCTAGGGTTTTGGAAATGGGGTTTTCGAGTAATTCAAGAATTCTTGCTCATGCTGTTTATACTGTCAGTTGCATGAGTAATGAGACTTTTATGAGAAAATTCGAGTTGTTTCGAAGTTTCGGGTTTGAAGAAGTTGAATTCAAGCAAATGTTTCGAAAATGTCCTATGTTGCTTAGGACATCAGAGGGGAAGTTAAGGATTGGGATCGATTTCTATTTGAATGTTGTTAAGTTTGAAAGGATTTTATTAGTTCGAAGACCGACTTGTTTGATGCATAATATGGTGGATAGAGTGATCCCTAGATATAGAGTTTTAGAGGTTATGAAGTCGAAGAGGTTGTTGAAAAAGGAGCCGAGTTTCATGAATGTGTTGAGTTTACCAGAGGAAGATTTCTTGCAGAAGTTCATATTTAGGTATAGAGATAATGCTGAGGAATTGCTGGTTGCTTACAAGGGCCATACTGGATTCTGA

Network for GWHGAAZE016961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	60	215	9.40E-19
PF02536.15	mTERF	147	337	2.50E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.159
	SRR3591706	second leaf	2.910
	SRR3591707	mature leaf	2.903
	SRR3591708	Shoot apex	6.079
	SRR3591709	Stem	3.857
	SRR3591710	White floral bud	5.129
	SRR3591711	White flower	6.135
	SRR3591712	Green floral bud	8.709
	SRR3591713	Yellow flower	4.196
SRP173429	SRR8316895	Juvenile bud stage	2.929
	SRR8316896	Juvenile bud stage	4.435
	SRR8316897	Juvenile bud stage	1.692
	SRR8316894	Third green stage	2.063
	SRR8316900	Third green stage	7.044
	SRR8316901	Third green stage	5.780
	SRR8316898	Complete white stage	2.497
	SRR8316899	Complete white stage	6.653
	SRR8316903	Complete white stage	4.455
	SRR8316902	Silver flowering stage	2.272
	SRR8316904	Silver flowering stage	4.748
	SRR8316905	Silver flowering stage	2.166
	SRR8316906	Gold flowering stage	5.167
	SRR8316907	Gold flowering stage	3.468
	SRR8316908	Gold flowering stage	5.085
SRP132670	SRR6706286	Control	5.229
	SRR6706287	Light intensity 50%	5.563
	SRR6706288	Light intensity 20%	6.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.865
	CNS0095593	Slightly white alabastrum(diploid) 2	1.989
	CNS0095594	Slightly white alabastrum(diploid) 3	2.115
	CNS0095595	Whole white alabastrum(diploid) 2	1.815
	CNS0095596	Whole white alabastrum(diploid) 3	1.612
	CNS0095597	Whole white alabastrum(diploid) 4	1.490
	CNS0095598	Silvery flower (diploied) 1	4.919
	CNS0095599	Silvery flower (diploied) 2	2.574
	CNS0095600	Silvery flower (diploied) 3	4.016
	CNS0095601	Golden flower (diploid) 1	1.608
	CNS0095602	Golden flower (diploid) 2	4.251
	CNS0095603	Golden flower (diploid) 3	3.928
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.541
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.897
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.455
	CNS0095610	Silvery flower (tetraploid) 1	4.866
	CNS0095611	Silvery flower (tetraploid) 2	6.087
	CNS0095612	Silvery flower (tetraploid) 3	4.148
	CNS0095613	Golden flower (tetraploid) 1	1.734
	CNS0095614	Golden flower (tetraploid) 2	3.834
	CNS0095615	Golden flower (tetraploid) 3	2.243
CRA001975	CRR073297	Stem 1	3.769
	CRR073298	Stem 2	3.320
	CRR073299	Stem 3	2.282
	CRR073300	Leaf 1	4.133
	CRR073301	Leaf 2	3.449
	CRR073302	Leaf 3	1.856
	CRR073303	Juvenile bud 1	2.356
	CRR073304	Juvenile bud 2	1.931
	CRR073305	Juvenile bud 3	2.338
	CRR073306	Third green 1	0.553
	CRR073307	Third green 2	0.515
	CRR073308	Third green 3	0.354
	CRR073309	Second white 1	1.477
	CRR073310	Second white 2	0.987
	CRR073311	Second white 3	0.806
	CRR073312	Silver flowering 1	0.415
	CRR073313	Silver flowering 2	0.610
	CRR073314	Silver flowering 3	1.471
	CRR073315	Gold flowering 1	2.274
	CRR073316	Gold flowering 2	2.109
	CRR073317	Gold flowering 3	2.874
	CRR073318	Tawny withering 1	1.865
	CRR073319	Tawny withering 2	1.224
	CRR073320	Tawny withering 3	2.062