Gene detail

Detail information of GWHGAAZE016963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603063.1	1.165E-154	PREDICTED: gamma-glutamyltranspeptidase 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8VYW6\|GAGT1_ARATH	1E-143	Gamma-glutamyltranspeptidase 1 (Precursor)
trEMBL	tr\|M1CYB4\|M1CYB4_SOLTU	6E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400077372}
TAIR10	AT4G39640.2	6E-101	gamma-glutamyl transpeptidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87873762	87875236	+
GWHAAZE00000004	mRNA	87873762	87875236	+
GWHAAZE00000004	exon	87873762	87874094	+
GWHAAZE00000004	exon	87874375	87874893	+
GWHAAZE00000004	exon	87875054	87875236	+
GWHAAZE00000004	CDS	87873762	87874094	+
GWHAAZE00000004	CDS	87874375	87874893	+
GWHAAZE00000004	CDS	87875054	87875236	+

Transcript Sequence
>GWHTAAZE016983 ATGTTCATCTCGAGGCCCAAAATTTTAGTTCTATTATGTATCCTATTTACTCTCACTTCGAGCCTAAACTCTGGTCCGGTTAGACGTGAGATAATCAAAGCATATCGCGGTGCAGTTGCAACTGATGATGGCCGGTGCTCAATAATTGGTAGAAATGTTCTTCGCGAAGGGGGTCACGCCATCGACGCATCAGTCGCAGCGTCTCTTTGTTTGGGGGTCGTGAGCTCGGCTTCTAGTGGCATTGGAGGAGGTGCATTCATGCTTGTCCGGTCAGCTAACAGAGAAGCACAAGCGTATGATATGAGAGAAAGTGCTCCCATACTCGCTTCTGAGAATATGTATGGTGGAAATGCTGCTCTAAAAGCTCGCGGTGCTCTCTCCATAGGAGTTCCTGGGGAACTTGCAGGGCTCCACAAAGCTTGGGAAAAGTACGGAAGGCTTCCATGGAAAAGGCTTGTACAACCTGCGGAATATCTTGCTCAATACGGCTACAAGATTTCGCCTTACCTCCATATGCAAATGGTTAAAACAGAATCGGGCATTATTGAAGATGATGGACTTCATTCTATTTTCACATTGAATGGGAGCCTCTTGAAACCTGGCGATACCTGCTACAACAAAAAACTGGCGAACACACTTAGAGCGATTGGAGAATTTGGACCAAAAGCCTTTTATAACGGATCGATTGGACTCGATTTGGTTAGAGATGTTAAGAAGGTTGGAGGGATATTGACAATGGACGATTTGAAGAATTATCAAGTTAAAGTTAGAAAACCAATCTCTTCAAATATTATGGGGCTTAATTTACTTGGTATGCCTCCTCCTTCCTCAGGAGGTCCCGCGATGGTACTTATACTAAACATTCTTTCTCAATATGGATCACATCCCGAAACTTCAATCTCCCTCAAAATCCACAGAGTTATTGAAGCTTTGAAAACCGCGTTCGCCGTGAGGATGAATCTTGGAGATCCAGATTTTGTCGATGTGAAACAAGTGGTAGCTGATATGCTCTCCCAAAATTTGCAGAAGAGATGA

Network for GWHGAAZE016963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01019.22	G_glu_transpept	52	342	1.30E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18592	GGT1_5, CD224	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Taurine and hypotaurine metabolism	map00430
		Cyanoamino acid metabolism	map00460
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	2.818
	SRR3591707	mature leaf	12.435
	SRR3591708	Shoot apex	0.335
	SRR3591709	Stem	0.607
	SRR3591710	White floral bud	17.517
	SRR3591711	White flower	40.299
	SRR3591712	Green floral bud	5.643
	SRR3591713	Yellow flower	78.317
SRP173429	SRR8316895	Juvenile bud stage	6.318
	SRR8316896	Juvenile bud stage	9.387
	SRR8316897	Juvenile bud stage	2.767
	SRR8316894	Third green stage	1.766
	SRR8316900	Third green stage	3.362
	SRR8316901	Third green stage	3.571
	SRR8316898	Complete white stage	4.445
	SRR8316899	Complete white stage	4.518
	SRR8316903	Complete white stage	6.039
	SRR8316902	Silver flowering stage	11.935
	SRR8316904	Silver flowering stage	20.764
	SRR8316905	Silver flowering stage	9.289
	SRR8316906	Gold flowering stage	44.217
	SRR8316907	Gold flowering stage	34.142
	SRR8316908	Gold flowering stage	54.903
SRP132670	SRR6706286	Control	6.549
	SRR6706287	Light intensity 50%	4.789
	SRR6706288	Light intensity 20%	4.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.143
	CNS0095593	Slightly white alabastrum(diploid) 2	1.231
	CNS0095594	Slightly white alabastrum(diploid) 3	7.189
	CNS0095595	Whole white alabastrum(diploid) 2	0.397
	CNS0095596	Whole white alabastrum(diploid) 3	1.293
	CNS0095597	Whole white alabastrum(diploid) 4	2.201
	CNS0095598	Silvery flower (diploied) 1	6.623
	CNS0095599	Silvery flower (diploied) 2	3.775
	CNS0095600	Silvery flower (diploied) 3	42.316
	CNS0095601	Golden flower (diploid) 1	6.122
	CNS0095602	Golden flower (diploid) 2	38.722
	CNS0095603	Golden flower (diploid) 3	36.763
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.775
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.702
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.162
	CNS0095610	Silvery flower (tetraploid) 1	61.423
	CNS0095611	Silvery flower (tetraploid) 2	62.866
	CNS0095612	Silvery flower (tetraploid) 3	57.725
	CNS0095613	Golden flower (tetraploid) 1	74.130
	CNS0095614	Golden flower (tetraploid) 2	85.146
	CNS0095615	Golden flower (tetraploid) 3	99.357
CRA001975	CRR073297	Stem 1	13.223
	CRR073298	Stem 2	10.724
	CRR073299	Stem 3	5.291
	CRR073300	Leaf 1	5.159
	CRR073301	Leaf 2	9.720
	CRR073302	Leaf 3	2.516
	CRR073303	Juvenile bud 1	0.748
	CRR073304	Juvenile bud 2	1.053
	CRR073305	Juvenile bud 3	4.091
	CRR073306	Third green 1	1.673
	CRR073307	Third green 2	0.452
	CRR073308	Third green 3	1.928
	CRR073309	Second white 1	5.392
	CRR073310	Second white 2	2.866
	CRR073311	Second white 3	3.023
	CRR073312	Silver flowering 1	7.294
	CRR073313	Silver flowering 2	7.063
	CRR073314	Silver flowering 3	5.001
	CRR073315	Gold flowering 1	12.878
	CRR073316	Gold flowering 2	22.023
	CRR073317	Gold flowering 3	11.627
	CRR073318	Tawny withering 1	3.805
	CRR073319	Tawny withering 2	2.791
	CRR073320	Tawny withering 3	0.717