Detail information of GWHGAAZE016966


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009617449.10PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Nicotiana tomentosiformis]
Swissprottr|Q940M2|AGT21_ARATH0Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (Precursor)
trEMBLtr|B5LAW1|B5LAW1_CAPAN0Putative aminotransferase {ECO:0000313|EMBL:ACF17668.1}
TAIR10AT4G39660.10alanine:glyoxylate aminotransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8792478887931165+
GWHAAZE00000004mRNA8792478887931165+
GWHAAZE00000004exon8792478887925018+
GWHAAZE00000004exon8792617587926405+
GWHAAZE00000004exon8792722887927398+
GWHAAZE00000004exon8792818887928331+
GWHAAZE00000004exon8792843287928611+
GWHAAZE00000004exon8792938987929614+
GWHAAZE00000004exon8792995187930064+
GWHAAZE00000004exon8793045187930537+
GWHAAZE00000004exon8793112287931165+
GWHAAZE00000004CDS8792478887925018+
GWHAAZE00000004CDS8792617587926405+
GWHAAZE00000004CDS8792722887927398+
GWHAAZE00000004CDS8792818887928331+
GWHAAZE00000004CDS8792843287928611+
GWHAAZE00000004CDS8792938987929614+
GWHAAZE00000004CDS8792995187930064+
GWHAAZE00000004CDS8793045187930537+
GWHAAZE00000004CDS8793112287931165+
Transcript Sequence

Network for GWHGAAZE016966

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.22Aminotran_3774681.10E-85
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00827AGXT2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf76.080
SRR3591706second leaf42.414
SRR3591707mature leaf55.850
SRR3591708Shoot apex48.913
SRR3591709Stem118.266
SRR3591710White floral bud86.815
SRR3591711White flower98.917
SRR3591712Green floral bud60.258
SRR3591713Yellow flower192.765
SRP173429 SRR8316895Juvenile bud stage 17.302
SRR8316896Juvenile bud stage 20.353
SRR8316897Juvenile bud stage 11.513
SRR8316894Third green stage 10.098
SRR8316900Third green stage 46.142
SRR8316901Third green stage 45.453
SRR8316898Complete white stage 68.134
SRR8316899Complete white stage 82.424
SRR8316903Complete white stage 107.892
SRR8316902Silver flowering stage75.636
SRR8316904Silver flowering stage90.898
SRR8316905Silver flowering stage56.149
SRR8316906Gold flowering stage 185.343
SRR8316907Gold flowering stage 175.968
SRR8316908Gold flowering stage 160.123
SRP132670SRR6706286Control68.551
SRR6706287Light intensity 50%68.089
SRR6706288Light intensity 20%66.048
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.278
CNS0095593Slightly white alabastrum(diploid) 226.722
CNS0095594Slightly white alabastrum(diploid) 321.539
CNS0095595Whole white alabastrum(diploid) 228.958
CNS0095596Whole white alabastrum(diploid) 329.111
CNS0095597Whole white alabastrum(diploid) 428.439
CNS0095598Silvery flower (diploied) 184.181
CNS0095599Silvery flower (diploied) 281.024
CNS0095600Silvery flower (diploied) 3226.196
CNS0095601Golden flower (diploid) 1115.376
CNS0095602Golden flower (diploid) 2202.385
CNS0095603Golden flower (diploid) 3192.350
CNS0095604Slightly white alabastrum(tetraploid) 136.021
CNS0095605Slightly white alabastrum(tetraploid) 227.530
CNS0095606Slightly white alabastrum(tetraploid) 369.400
CNS0095607Whole white alabastrum(tetraploid) 126.781
CNS0095608Whole white alabastrum(tetraploid) 225.854
CNS0095609Whole white alabastrum(tetraploid) 358.222
CNS0095610Silvery flower (tetraploid) 1313.564
CNS0095611Silvery flower (tetraploid) 2437.914
CNS0095612Silvery flower (tetraploid) 3460.255
CNS0095613Golden flower (tetraploid) 1393.905
CNS0095614Golden flower (tetraploid) 2430.316
CNS0095615Golden flower (tetraploid) 31100.384
CRA001975CRR073297Stem 127.843
CRR073298Stem 225.924
CRR073299Stem 327.783
CRR073300Leaf 152.460
CRR073301Leaf 249.229
CRR073302Leaf 350.482
CRR073303Juvenile bud 161.351
CRR073304Juvenile bud 265.863
CRR073305Juvenile bud 360.577
CRR073306Third green 1131.907
CRR073307Third green 2105.589
CRR073308Third green 395.813
CRR073309Second white 1153.086
CRR073310Second white 2122.071
CRR073311Second white 3112.377
CRR073312Silver flowering 187.293
CRR073313Silver flowering 260.284
CRR073314Silver flowering 372.601
CRR073315Gold flowering 131.743
CRR073316Gold flowering 240.762
CRR073317Gold flowering 327.932
CRR073318Tawny withering 152.412
CRR073319Tawny withering 238.396
CRR073320Tawny withering 345.316