Gene detail

Detail information of GWHGAAZE016967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652847.1	0	PREDICTED: transcription factor TGA1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q39237\|TGA1_ARATH	4E-164	Transcription factor TGA1
trEMBL	tr\|A0A061DI74\|A0A061DI74_THECC	0	BZIP transcription factor family protein isoform 1 {ECO:0000313\|EMBL:EOX92234.1}
TAIR10	AT5G65210.5	2E-110	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87932189	87942307	-
GWHAAZE00000004	mRNA	87932189	87942307	-
GWHAAZE00000004	exon	87932189	87932341	-
GWHAAZE00000004	exon	87935135	87935359	-
GWHAAZE00000004	exon	87936197	87936540	-
GWHAAZE00000004	exon	87938393	87938456	-
GWHAAZE00000004	exon	87939966	87940043	-
GWHAAZE00000004	exon	87940144	87940203	-
GWHAAZE00000004	exon	87941290	87941367	-
GWHAAZE00000004	exon	87942152	87942307	-
GWHAAZE00000004	CDS	87942152	87942307	-
GWHAAZE00000004	CDS	87941290	87941367	-
GWHAAZE00000004	CDS	87940144	87940203	-
GWHAAZE00000004	CDS	87939966	87940043	-
GWHAAZE00000004	CDS	87938393	87938456	-
GWHAAZE00000004	CDS	87936197	87936540	-
GWHAAZE00000004	CDS	87935135	87935359	-
GWHAAZE00000004	CDS	87932189	87932341	-

Transcript Sequence
>GWHTAAZE016987 ATGCATTCTCCATCCAACCAGTATGTCACCTCAAGGGGGATGGGTATGTATGAGCCAATTCACCAGATTAGCATGTGGGGAGATTTCAAAGGCAATGGCTTTCCAAACACGCCTGCGTCCGTGATTATAGAGGTGGACACTAAACAAGACAGCCAGTCAGAGGAGACATCACAGGGAACACTTGGACCGACCTCCAACAATTTTGATCAAGAAGCAACTAAACCTGTTGATAAGGTGCTGAGACGTCTTGCACAAAACCGTGAGGCAGCTCGTAAAAGTCGTTTGCGGAAAAAGGCCTATGTTCAGCAACTAGAGACAAGTCGTTTAAAACTGCTTCAACTGGAACAAGAGCTTGAACGAGCTAGGCAACAGGGTGCATATCTAGGTGGTGGATTAGATGCTAGTCATGTAGGGTACTGTGGAAGTTTGAACTCAGTGGATGCTCTCACTGTGTTCTTTTTGCTGCAGGTATTATATAATTCCCTTATCTACTCAATCGATTTTGCAGGTATTGCCACATTTGAGATGGAGTATGAACGCTGGGTAGAAGTACAAACTAGACAAAATTTCGAATTAAGAAGTGCATTGAATACTCATCTAGCAGATATAGAACTGAGAATGCTTGTCGACAGTGTGATGAACCATTATTTTGATCTCTTCCGCATGAAAGCAAATGCTGCAAAGGCTGATGTGTTCTACCTCATGTCGGGCATGTGGAAAACTTCGGCTGAACGCTTTTTCATGTGGATTGGAGGTTTTCGCCCTTCAGAACTTCTAAAGGTTCTCGTTCAACATCTCGATCTTTTGGACCAACAACTGTTGGAAGTTTGTAACCTTAAGCAATCATGTCAGCAAGCAGAAGATGCACTCTCACAAGGAATGGATAAACTCCAGCAAATTCTATCCGAGACTGTGGCGTCCGGTAAACTCTGCGAAGGAATGTACAACCCTAGGGAGGGTAATGCATTGGAAAACCTGGAAGCGCTCGTGTGTTTTGTGACTCAGGCAGATCATCTTCGACAGGAAACACTGCAACAAATGTCTCGGATCCTAACTATACGGCAAGCAGCTCAAGGCTTGCTGGCATTGGGGGAGTACTGCCATCGCCTTCGAGCTCTCACTTCCCTTTGGGCTACTCGCCCTCGTGAGCCTACCTAA

Network for GWHGAAZE016967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	77	113	3.30E-08
PF14144.7	DOG1	191	263	9.70E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006351	biological_process	transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.250
	SRR3591706	second leaf	17.736
	SRR3591707	mature leaf	69.715
	SRR3591708	Shoot apex	17.341
	SRR3591709	Stem	91.367
	SRR3591710	White floral bud	21.989
	SRR3591711	White flower	29.958
	SRR3591712	Green floral bud	28.486
	SRR3591713	Yellow flower	16.735
SRP173429	SRR8316895	Juvenile bud stage	10.346
	SRR8316896	Juvenile bud stage	19.951
	SRR8316897	Juvenile bud stage	6.001
	SRR8316894	Third green stage	8.753
	SRR8316900	Third green stage	24.066
	SRR8316901	Third green stage	23.680
	SRR8316898	Complete white stage	9.621
	SRR8316899	Complete white stage	48.802
	SRR8316903	Complete white stage	17.051
	SRR8316902	Silver flowering stage	7.698
	SRR8316904	Silver flowering stage	7.827
	SRR8316905	Silver flowering stage	2.562
	SRR8316906	Gold flowering stage	15.464
	SRR8316907	Gold flowering stage	24.194
	SRR8316908	Gold flowering stage	12.090
SRP132670	SRR6706286	Control	25.182
	SRR6706287	Light intensity 50%	23.508
	SRR6706288	Light intensity 20%	26.846
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.149
	CNS0095593	Slightly white alabastrum(diploid) 2	16.516
	CNS0095594	Slightly white alabastrum(diploid) 3	12.370
	CNS0095595	Whole white alabastrum(diploid) 2	11.963
	CNS0095596	Whole white alabastrum(diploid) 3	14.585
	CNS0095597	Whole white alabastrum(diploid) 4	14.321
	CNS0095598	Silvery flower (diploied) 1	19.078
	CNS0095599	Silvery flower (diploied) 2	15.423
	CNS0095600	Silvery flower (diploied) 3	19.686
	CNS0095601	Golden flower (diploid) 1	15.980
	CNS0095602	Golden flower (diploid) 2	16.991
	CNS0095603	Golden flower (diploid) 3	16.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.129
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.497
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.192
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.357
	CNS0095610	Silvery flower (tetraploid) 1	16.555
	CNS0095611	Silvery flower (tetraploid) 2	13.538
	CNS0095612	Silvery flower (tetraploid) 3	8.673
	CNS0095613	Golden flower (tetraploid) 1	8.679
	CNS0095614	Golden flower (tetraploid) 2	9.889
	CNS0095615	Golden flower (tetraploid) 3	7.079
CRA001975	CRR073297	Stem 1	15.340
	CRR073298	Stem 2	14.206
	CRR073299	Stem 3	4.660
	CRR073300	Leaf 1	31.101
	CRR073301	Leaf 2	31.075
	CRR073302	Leaf 3	9.245
	CRR073303	Juvenile bud 1	15.949
	CRR073304	Juvenile bud 2	9.363
	CRR073305	Juvenile bud 3	19.800
	CRR073306	Third green 1	1.501
	CRR073307	Third green 2	1.340
	CRR073308	Third green 3	2.042
	CRR073309	Second white 1	2.112
	CRR073310	Second white 2	4.279
	CRR073311	Second white 3	3.342
	CRR073312	Silver flowering 1	2.123
	CRR073313	Silver flowering 2	1.744
	CRR073314	Silver flowering 3	1.536
	CRR073315	Gold flowering 1	30.764
	CRR073316	Gold flowering 2	39.677
	CRR073317	Gold flowering 3	23.309
	CRR073318	Tawny withering 1	34.096
	CRR073319	Tawny withering 2	49.588
	CRR073320	Tawny withering 3	38.456