Gene detail

Detail information of GWHGAAZE016985

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011097594.1	PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Sesamum indicum]
Swissprot	tr\|O65201\|ACOX2_ARATH	Acyl-coenzyme A oxidase 2, peroxisomal (Precursor)
trEMBL	tr\|A0A067LQL0\|A0A067LQL0_JATCU	Acyl-coenzyme A oxidase {ECO:0000256\|PIRNR:PIRNR000168}
TAIR10	AT5G65110.1	acyl-CoA oxidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	88488415	88496328	-
GWHAAZE00000004	mRNA	88488415	88496328	-
GWHAAZE00000004	exon	88488415	88488576	-
GWHAAZE00000004	exon	88489236	88489359	-
GWHAAZE00000004	exon	88489450	88489616	-
GWHAAZE00000004	exon	88490376	88490555	-
GWHAAZE00000004	exon	88492089	88492969	-
GWHAAZE00000004	exon	88493311	88493426	-
GWHAAZE00000004	exon	88495895	88496328	-
GWHAAZE00000004	CDS	88495895	88496328	-
GWHAAZE00000004	CDS	88493311	88493426	-
GWHAAZE00000004	CDS	88492089	88492969	-
GWHAAZE00000004	CDS	88490376	88490555	-
GWHAAZE00000004	CDS	88489450	88489616	-
GWHAAZE00000004	CDS	88489236	88489359	-
GWHAAZE00000004	CDS	88488415	88488576	-

Transcript Sequence
>GWHTAAZE017005 ATGGAACACAATCAAACCATGGAGGACGAAGTTCAATCCGCCTCCGCCGCTAGGCGGATCCAACGCCTCTCATCTCACCTCAATCCAATACTTCCCGATCATTCCGACAATCTGGAGCTGCAATTGTGTGCGTCGCGAGTGAAGGTTAGTGTGAATACGCAAAGATTGTCCGACTTCATGAGGGGGAAACACCGGGACATACAGGAGAGAGTTTATGACTACTTCAACTCTCGGCCGGATCTTCTGACCCCGATCGAGATCTTGAAAGATGAACATAGGGACTTGTGTGCGAGGCAATTGTTAGGTGTAGTTAGGGATGCGGGGATTAAGCCTTTTAGGTATGTTGCTGAAGATCCTTCTAAGTATTTTGCTATTATTGAAGCTGTTGGGAGTATTGATATGTCTCTTGGGATTAAGATGGGCGTGCAATACAGTCTTTGGGGAGGCTCTGTGCTCAACTTGGGAACTAAGAAACATAAGGATAAGTATTTTGAAGGCATTGACAATTTGGAGTATTTTGGATGTTTTGCAATGACAGAACTTCATCATGGCTCAAATGTTCAAGGCCTCCAAACCATTGCTACATTTGATCCACTCACCGATGAATTCATTATCAACACACCCAACGACGGTGCCATCAAATGGTGGATCGGCAATGCTGCAGTTCACGGCAAATTCGCAACAGTTTTTGCAAAACTAATATTACCATCACAAGACAAGGAAGGCATTTCTGATATGGGTGTGCACGCATTCATTGTTCCAATAAGGGACTTAAAGACTCATCAAACACTCCCGGGAATTGAAATACACGATTGTGGTCACAAAATTGGCTTAAATGGGGTTGATAACGGAGCCCTGAGATTCCGTTCCATTAGAATCCCAAGAGATAATCTTCTTAATCGATTTGGAGACGTCTCCAGTGATGGGAAATACACAAGCTCCCTCCCTACCATCAATAAAAGATTCGCTGCCACACTTGGTGAACTTGTAGGTGGCAGAGTCGGTCTTGCATATTCGTCTGTTGGTGTTCTTAAAATTGCAGTCACAATTGCTACCCGTTATTCTCTACTTCGCCAGCAATTTGGACCTCCAAAAAAGCCCGAGATAAGTATTCTTGATTACCAGTCTCAACAGCATAAGCTGATGCCAATGCTGGCCTCAACTTATGCGTTCCATTTTGCTACTCTGCATTTGGTGGACAAATATTCGGAGATGAAGAAGACCCATGATGAAGAACTTGTGGTTGATGTGCATGCACTTTCGGCAGGGCTAAAGGCCTATGTGACTTCTTATACTGCTAAGTCGTTGAGTATCTGTAGGCAAGCTTGCGGTGGCCATGGATATGCTGCTGTTAATCGGTTTGGGAGCTTAAGGAATGATCATGATATATTTCAGACTTTTGAAGGAGACAACACTGTGCTTCTACAGCAGGTAGCAGGTGACCTTTTGAAGCAGTACAAGGAGAAGTTCCAAGGTGGAACACTTTCTGTAACATGGAACTATTTAAGAGACTCCATGAACACATACCTCTCTCAGCCAAACCCTGTAACCGCCAGGTGGGAAGGTGAAATCCATTTAAGAGACCCCAAGTTCCAGTTGGACGCCTTCAGGTACCGTACATCTCGATTGCTCCATAGTGCTGCCCTTCGATTGAGGAAGCATTCAAAGACTCTGGGGAGCTTCGGCGCTTGGAATAGATGCTTAAATCACCTTTTGACGCTTGCAGAGTCCCACATTGAAACTGTCATCCTCGAAAATTTCATTGAAGCCATTCGAAGTTGCCCTGATGCAAGTTCTCGAGCTGCCTTGAAACTTGTGTGTGATCTTTATGCGATGGAGCGAATCTGGAATGATATAGGAACTTATCGCAATGTGGACTATGTGGCCCCTAACAAAGCTAAGGCAATACACAAGTTGACAGAATACCTGAGTTTTCAAGTGAAGGAGATCGCAAGGGAACTTGTAGACGCTTTTGATCTACCGGATCACGTTACGCGTGCTCCGATTGGTATACAATCTCCAGTAGAAGCTTATACTCAGTATACCCAGTACGTAGGATTCTAG

Network for GWHGAAZE016985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02770.20	Acyl-CoA_dh_M	175	289	3.10E-15
PF00441.25	Acyl-CoA_dh_1	323	480	6.30E-11
PF01756.20	ACOX	528	671	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00232	E1.3.3.6, ACOX1, ACOX3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Propanoate metabolism	map00640
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Biosynthesis of unsaturated fatty acids	map01040
		beta-Alanine metabolism	map00410
		cAMP signaling pathway	map04024
		Peroxisome	map04146
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0006635	biological_process	fatty acid beta-oxidation
GO:0055114	biological_process	oxidation-reduction process
GO:0006631	biological_process	fatty acid metabolic process
GO:0005777	cellular_component	peroxisome
GO:0003997	molecular_function	acyl-CoA oxidase activity
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.740
	SRR3591706	second leaf	5.848
	SRR3591707	mature leaf	6.611
	SRR3591708	Shoot apex	6.131
	SRR3591709	Stem	17.750
	SRR3591710	White floral bud	9.023
	SRR3591711	White flower	29.460
	SRR3591712	Green floral bud	8.868
	SRR3591713	Yellow flower	107.520
SRP173429	SRR8316895	Juvenile bud stage	10.043
	SRR8316896	Juvenile bud stage	18.374
	SRR8316897	Juvenile bud stage	5.374
	SRR8316894	Third green stage	6.181
	SRR8316900	Third green stage	18.211
	SRR8316901	Third green stage	19.782
	SRR8316898	Complete white stage	5.717
	SRR8316899	Complete white stage	12.432
	SRR8316903	Complete white stage	8.576
	SRR8316902	Silver flowering stage	10.498
	SRR8316904	Silver flowering stage	13.755
	SRR8316905	Silver flowering stage	6.967
	SRR8316906	Gold flowering stage	48.946
	SRR8316907	Gold flowering stage	33.117
	SRR8316908	Gold flowering stage	39.934
SRP132670	SRR6706286	Control	16.947
	SRR6706287	Light intensity 50%	16.572
	SRR6706288	Light intensity 20%	18.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.761
	CNS0095593	Slightly white alabastrum(diploid) 2	5.987
	CNS0095594	Slightly white alabastrum(diploid) 3	11.185
	CNS0095595	Whole white alabastrum(diploid) 2	7.141
	CNS0095596	Whole white alabastrum(diploid) 3	7.341
	CNS0095597	Whole white alabastrum(diploid) 4	4.732
	CNS0095598	Silvery flower (diploied) 1	11.436
	CNS0095599	Silvery flower (diploied) 2	9.283
	CNS0095600	Silvery flower (diploied) 3	30.546
	CNS0095601	Golden flower (diploid) 1	10.812
	CNS0095602	Golden flower (diploid) 2	59.399
	CNS0095603	Golden flower (diploid) 3	55.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.953
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.297
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.390
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.342
	CNS0095610	Silvery flower (tetraploid) 1	48.044
	CNS0095611	Silvery flower (tetraploid) 2	35.461
	CNS0095612	Silvery flower (tetraploid) 3	43.087
	CNS0095613	Golden flower (tetraploid) 1	57.993
	CNS0095614	Golden flower (tetraploid) 2	70.921
	CNS0095615	Golden flower (tetraploid) 3	158.899
CRA001975	CRR073297	Stem 1	20.310
	CRR073298	Stem 2	18.418
	CRR073299	Stem 3	20.340
	CRR073300	Leaf 1	21.153
	CRR073301	Leaf 2	21.555
	CRR073302	Leaf 3	18.993
	CRR073303	Juvenile bud 1	11.772
	CRR073304	Juvenile bud 2	10.276
	CRR073305	Juvenile bud 3	15.264
	CRR073306	Third green 1	14.557
	CRR073307	Third green 2	13.097
	CRR073308	Third green 3	12.696
	CRR073309	Second white 1	42.811
	CRR073310	Second white 2	44.590
	CRR073311	Second white 3	55.040
	CRR073312	Silver flowering 1	97.164
	CRR073313	Silver flowering 2	117.362
	CRR073314	Silver flowering 3	110.222
	CRR073315	Gold flowering 1	9.864
	CRR073316	Gold flowering 2	13.206
	CRR073317	Gold flowering 3	12.363
	CRR073318	Tawny withering 1	16.429
	CRR073319	Tawny withering 2	11.593
	CRR073320	Tawny withering 3	12.061