Gene detail

Detail information of GWHGAAZE016996

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237394.1	5.6333E-156	PREDICTED: uncharacterized protein LOC101260128 [Solanum lycopersicum]
Swissprot	tr\|Q9SIE0\|ALKB2_ARATH	0.0000002	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
trEMBL	tr\|K4BSR3\|K4BSR3_SOLLC	2E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g055160.2.1}
TAIR10	AT4G39860.1	8E-97	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89003449	89009656	+
GWHAAZE00000004	mRNA	89003449	89009656	+
GWHAAZE00000004	exon	89003449	89003583	+
GWHAAZE00000004	exon	89004055	89004125	+
GWHAAZE00000004	exon	89006299	89006434	+
GWHAAZE00000004	exon	89007142	89007456	+
GWHAAZE00000004	exon	89009288	89009656	+
GWHAAZE00000004	CDS	89003449	89003583	+
GWHAAZE00000004	CDS	89004055	89004125	+
GWHAAZE00000004	CDS	89006299	89006434	+
GWHAAZE00000004	CDS	89007142	89007456	+
GWHAAZE00000004	CDS	89009288	89009557	+
GWHAAZE00000004	three_prime_UTR	89009558	89009656	+

Transcript Sequence
>GWHTAAZE017016 ATGGAGAGACCGCCACATGTACAGAAGGCACACGCATCCACCGCCGATCTACTCACCTGGACGGAGGCTCCTCCCTCCGATGCTCCCACGGTCGGCCCTGGCTTCGCCTTCCACTCCGGCGCTCGTTCTCATCAGCCGTCGGAAGGAATCAGAAAGGTGTTGTCTGGTCAGATCACTGATGAAGAAGCTGAGAGTCTAAATAGAAGGAAGCCTTGTTCAGGATATAAGTTAAAGGAGATATCAGGGAGCAAAATATTTGCGGTTGATGGGGAAGATGGTGTCCACGAATCTGGCACTGCTAAACATAATCCTGATTACAGAACGTCAGTGCGCATTGTTCAGCAAGCAGTAAATGGAATAAGCCAGATTTCATTCAGTACCGACGAGGACATTTCTCCAAAGAAGCCAATCTCTCTTCCTGAGGTAGCAAAGCAGCGTGAGTTAAGTGGAACGCTAGAAAGCGAGTCGGACAGTAAGAACAAGAAGCAGCTTTCAAATGCTAAGTCAAAGGAACTCAGTGGAAATGATATATTTGGCCCTCCTCCTGAGATTCCTCATAGATCATCAGCTGCTGCTCGCTCCTTGGAATCTAAAGGAAACAAAGAGATGGATGAACCGGCACCTCGAAGTGTGCACACATCTGTCAGAGTTTCTAATCCTGCTGGAGGCCATAGTAGTATCCTGTTCAGCGATGAACCAGTGACAAAGACGACAAAGAAAATACATGACCAGAAATTCGCCGAGCTGACTGGCAACAATATTTTCAAAGGTGACATTCCACCTGGGTCCGCAGAGAAACCTTTGAGTGTGGCCAAGCTGAGAGAAATGAGTGGCAGCAATATATTTGCCGATGGAAAAGTGAAATCGAGAGGTATGGGTGGCGTTCGTAAGCCCCCTGGAGGTGAAAGCAGCATTGCCCTTATTTAGTTAGTTCTGTACGTTGGCTTGCATATACTCTGTTGTTGTAATACTAATCACCTTGTTACCACTATATATCTTGCTACATGGTGACCTCGGCAAAGTTAC

Network for GWHGAAZE016996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0102

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13266.7	DUF4057	5	306	1.10E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.968
	SRR3591706	second leaf	46.913
	SRR3591707	mature leaf	51.746
	SRR3591708	Shoot apex	60.568
	SRR3591709	Stem	61.351
	SRR3591710	White floral bud	81.866
	SRR3591711	White flower	47.356
	SRR3591712	Green floral bud	79.086
	SRR3591713	Yellow flower	34.620
SRP173429	SRR8316895	Juvenile bud stage	45.612
	SRR8316896	Juvenile bud stage	53.312
	SRR8316897	Juvenile bud stage	27.788
	SRR8316894	Third green stage	26.252
	SRR8316900	Third green stage	78.118
	SRR8316901	Third green stage	73.987
	SRR8316898	Complete white stage	47.773
	SRR8316899	Complete white stage	122.250
	SRR8316903	Complete white stage	58.225
	SRR8316902	Silver flowering stage	22.983
	SRR8316904	Silver flowering stage	28.572
	SRR8316905	Silver flowering stage	18.543
	SRR8316906	Gold flowering stage	47.026
	SRR8316907	Gold flowering stage	42.930
	SRR8316908	Gold flowering stage	57.372
SRP132670	SRR6706286	Control	70.184
	SRR6706287	Light intensity 50%	77.077
	SRR6706288	Light intensity 20%	79.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.972
	CNS0095593	Slightly white alabastrum(diploid) 2	65.066
	CNS0095594	Slightly white alabastrum(diploid) 3	62.189
	CNS0095595	Whole white alabastrum(diploid) 2	70.223
	CNS0095596	Whole white alabastrum(diploid) 3	77.488
	CNS0095597	Whole white alabastrum(diploid) 4	78.320
	CNS0095598	Silvery flower (diploied) 1	79.378
	CNS0095599	Silvery flower (diploied) 2	65.899
	CNS0095600	Silvery flower (diploied) 3	55.765
	CNS0095601	Golden flower (diploid) 1	76.038
	CNS0095602	Golden flower (diploid) 2	52.415
	CNS0095603	Golden flower (diploid) 3	56.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.525
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.301
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.196
	CNS0095610	Silvery flower (tetraploid) 1	43.124
	CNS0095611	Silvery flower (tetraploid) 2	51.169
	CNS0095612	Silvery flower (tetraploid) 3	47.419
	CNS0095613	Golden flower (tetraploid) 1	26.277
	CNS0095614	Golden flower (tetraploid) 2	32.908
	CNS0095615	Golden flower (tetraploid) 3	23.001
CRA001975	CRR073297	Stem 1	99.679
	CRR073298	Stem 2	92.362
	CRR073299	Stem 3	115.373
	CRR073300	Leaf 1	90.391
	CRR073301	Leaf 2	91.535
	CRR073302	Leaf 3	94.051
	CRR073303	Juvenile bud 1	95.919
	CRR073304	Juvenile bud 2	91.706
	CRR073305	Juvenile bud 3	105.049
	CRR073306	Third green 1	65.408
	CRR073307	Third green 2	57.551
	CRR073308	Third green 3	53.272
	CRR073309	Second white 1	38.104
	CRR073310	Second white 2	33.629
	CRR073311	Second white 3	24.275
	CRR073312	Silver flowering 1	23.345
	CRR073313	Silver flowering 2	30.575
	CRR073314	Silver flowering 3	23.085
	CRR073315	Gold flowering 1	142.277
	CRR073316	Gold flowering 2	146.444
	CRR073317	Gold flowering 3	112.517
	CRR073318	Tawny withering 1	102.541
	CRR073319	Tawny withering 2	69.749
	CRR073320	Tawny withering 3	102.735