Gene detail

Detail information of GWHGAAZE016999

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP01451.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFU1\|ASNS3_ARATH	Asparagine synthetase [glutamine-hydrolyzing] 3
trEMBL	tr\|A0A068TYV2\|A0A068TYV2_COFCA	Asparagine synthetase {ECO:0000256\|PIRNR:PIRNR001589}
TAIR10	AT5G10240.1	asparagine synthetase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89106547	89120178	-
GWHAAZE00000004	mRNA	89106547	89120178	-
GWHAAZE00000004	exon	89106547	89106687	-
GWHAAZE00000004	exon	89107412	89107706	-
GWHAAZE00000004	exon	89108184	89108291	-
GWHAAZE00000004	exon	89108399	89108485	-
GWHAAZE00000004	exon	89108679	89108759	-
GWHAAZE00000004	exon	89109704	89109838	-
GWHAAZE00000004	exon	89109999	89110220	-
GWHAAZE00000004	exon	89110316	89110396	-
GWHAAZE00000004	exon	89111453	89111614	-
GWHAAZE00000004	exon	89111996	89112090	-
GWHAAZE00000004	exon	89117819	89117914	-
GWHAAZE00000004	exon	89118719	89118860	-
GWHAAZE00000004	exon	89119113	89119208	-
GWHAAZE00000004	exon	89120023	89120178	-
GWHAAZE00000004	CDS	89120023	89120178	-
GWHAAZE00000004	CDS	89119113	89119208	-
GWHAAZE00000004	CDS	89118719	89118860	-
GWHAAZE00000004	CDS	89117819	89117914	-
GWHAAZE00000004	CDS	89111996	89112090	-
GWHAAZE00000004	CDS	89111453	89111614	-
GWHAAZE00000004	CDS	89110316	89110396	-
GWHAAZE00000004	CDS	89109999	89110220	-
GWHAAZE00000004	CDS	89109704	89109838	-
GWHAAZE00000004	CDS	89108679	89108759	-
GWHAAZE00000004	CDS	89108399	89108485	-
GWHAAZE00000004	CDS	89108184	89108291	-
GWHAAZE00000004	CDS	89107473	89107706	-
GWHAAZE00000004	three_prime_UTR	89107412	89107472	-
GWHAAZE00000004	three_prime_UTR	89106547	89106687	-

Transcript Sequence
>GWHTAAZE017019 ATGATTGGAAAGTGTAGGCTACGGCACAGAGGTCCTGATTGGAGTGGCTTGCATTGTCACGAGGACTGTTATCTTGCTCATCAACGATTAGCCATTGTAGATCCTGCTTCTGGAGATCAGCCCCTATACAATGAAAACAAGACAGTTGTTGTGACGGTAAATGGCGAGATATATAACCATAAAGCCTTGAGGGAAAAGTTGAAGTCTCATGAGTTCAATACCGGCAGTGACTGCGAAGTGATTGCTCATCTTTACGAAGAATATGGAGAAGATTTTATTGATATGTTGGATGGAATGTTCTCTTTTGTGCTTCTTGACACACGCGACAAAAGTTTCATTGCAGCTCGGGACGCTATTGGTATTACACCACTTTACATGGGCTGGGGTCTTGATGGCTCGGTTTGGTTCGCTTCAGAAATGAAAGCTTTGAGCGATGATTGTGAACGATTTGTGTCATTCCCTCCTGGGCATATATATTCTAGCAAGACTGGTGAGCTCAGAAGGTGGTATAACCCGCCATGGTTTTTGGAAAACATACCTTCAGCTCCATATGATTCCCTCGTATTACGCCAGGCGTTTGAGAAGGCTGTGGTTAAGAGACTTATGACAGACGTACCATTTGGTGTACTTCTGTCAGGAGGACTGGATTCATCACTTGTTGCAGCTGTGGCTTCCCGCTATATGTCTGATTCAGCAGCCGCTTGCCAGTGGGGTTCACAGTTGCATACCTTTTGCATTGGCCTGAGGGGTTCTCCTGATCTGAAAGCTGCCAGGGAAGTAGCAGATTATCTTGGCACTCGTCACCATGAATTTTACTTTACTGTTCAGGAAGGACTAGATGCACTGGAAGAGGTCATATATCATATTGAAACGTATGACGTGACCACTATTAGAGCAAGTACACCCATGTTTCTAATGTCTCGAAAGATCAAATCTTTGGGAGTAAAAATGGTTATTTCTGGTGAAGGTTCTGATGAAATCTTTGGAGGTTACTTGTACTTCCACAAAGCACCTAACAAGGAGGAGTTCCACCAGGAAACCTGTCGAAAGATTAAAGCTCTTCACTTGTACGACTGTTTGAGGGCCAACAAATCAACTTCAGCATGGGGTGTTGAGGCCCGTGTTCCCTTTTTAGATAAAGAATTCATCAATGTGGCAATGGCCATTGATCCAGAGTGGAAAATGATCAGGTCTGATCTTGGAAGGATTGAGAAGTGGATTCTACGGAATGCATTTGATGACGACAAGAATCCATATCTGCCAAAGCACATATTGTACAGACAAAAGGAACAGTTCAGTGATGGAGTTGGGTACAGTTGGATTGATGGCTTGAAGGATCATGCAAATCAACAGGTGACAGATTCAATGTTAACAAACGCAAGCTTTGTTTACCCTGAAAATACCCCTACGACAAAAGAAGCGTACTATTACAGGACTATCTTTGAGAAGTTCTTTCCCAAGAATGCCGCAAGGTCAACGGTCCCAGGTGGACCAAGTGTGGCATGCAGTACAGCAAAAGCAGTGGAATGGGATGCGTCATGGTCAAAAAATCTGGATCCTTCGGGTCGAGCTGCTCTTGGTGTTCATGCTGATGCTTATGAGGGAGCTTTGGAGGTTGACAACAAAACAAATGCAATTAATGGCTCTCCTCAGAAACTACAAGTTGAGAAGACTGCAGCTGTAGCTTTAGTATAATAATAAGATACGATTCAGTTCCATTCTTATTTGTTGGCTCCATCTCACCCATGATTTCCAGGGGTATCAGTCCCAACATGTGATGGAACTTTCTTGTGTGGTTTAGAAGTTGCAAAGAAAGAATCACAATAGAGCGGAGAGCTTTGCATAGCATCTATCTCATAGTGTTACAAGTTGCAAAGAAAGAATAACAATAGAGTTG

Network for GWHGAAZE016999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13537.7	GATase_7	27	144	3.10E-43
PF00733.22	Asn_synthase	189	340	3.10E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01953	asnB, ASNS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006529	biological_process	asparagine biosynthetic process
GO:0004066	molecular_function	asparagine synthase (glutamine-hydrolyzing) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.289
	SRR3591706	second leaf	32.699
	SRR3591707	mature leaf	23.193
	SRR3591708	Shoot apex	47.810
	SRR3591709	Stem	29.338
	SRR3591710	White floral bud	68.276
	SRR3591711	White flower	76.297
	SRR3591712	Green floral bud	104.852
	SRR3591713	Yellow flower	52.394
SRP173429	SRR8316895	Juvenile bud stage	37.397
	SRR8316896	Juvenile bud stage	63.110
	SRR8316897	Juvenile bud stage	29.558
	SRR8316894	Third green stage	24.661
	SRR8316900	Third green stage	79.494
	SRR8316901	Third green stage	92.977
	SRR8316898	Complete white stage	25.404
	SRR8316899	Complete white stage	105.838
	SRR8316903	Complete white stage	40.991
	SRR8316902	Silver flowering stage	24.066
	SRR8316904	Silver flowering stage	31.557
	SRR8316905	Silver flowering stage	18.202
	SRR8316906	Gold flowering stage	96.680
	SRR8316907	Gold flowering stage	59.641
	SRR8316908	Gold flowering stage	98.377
SRP132670	SRR6706286	Control	50.661
	SRR6706287	Light intensity 50%	58.108
	SRR6706288	Light intensity 20%	71.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.716
	CNS0095593	Slightly white alabastrum(diploid) 2	48.038
	CNS0095594	Slightly white alabastrum(diploid) 3	49.327
	CNS0095595	Whole white alabastrum(diploid) 2	38.182
	CNS0095596	Whole white alabastrum(diploid) 3	41.723
	CNS0095597	Whole white alabastrum(diploid) 4	33.838
	CNS0095598	Silvery flower (diploied) 1	24.774
	CNS0095599	Silvery flower (diploied) 2	20.535
	CNS0095600	Silvery flower (diploied) 3	50.419
	CNS0095601	Golden flower (diploid) 1	21.857
	CNS0095602	Golden flower (diploid) 2	39.294
	CNS0095603	Golden flower (diploid) 3	36.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.717
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.506
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	76.624
	CNS0095610	Silvery flower (tetraploid) 1	58.938
	CNS0095611	Silvery flower (tetraploid) 2	44.227
	CNS0095612	Silvery flower (tetraploid) 3	50.605
	CNS0095613	Golden flower (tetraploid) 1	38.080
	CNS0095614	Golden flower (tetraploid) 2	67.003
	CNS0095615	Golden flower (tetraploid) 3	51.758
CRA001975	CRR073297	Stem 1	52.109
	CRR073298	Stem 2	52.296
	CRR073299	Stem 3	50.651
	CRR073300	Leaf 1	99.454
	CRR073301	Leaf 2	73.884
	CRR073302	Leaf 3	82.509
	CRR073303	Juvenile bud 1	82.886
	CRR073304	Juvenile bud 2	73.916
	CRR073305	Juvenile bud 3	84.402
	CRR073306	Third green 1	21.301
	CRR073307	Third green 2	16.780
	CRR073308	Third green 3	23.095
	CRR073309	Second white 1	30.254
	CRR073310	Second white 2	38.073
	CRR073311	Second white 3	37.179
	CRR073312	Silver flowering 1	37.499
	CRR073313	Silver flowering 2	37.790
	CRR073314	Silver flowering 3	32.137
	CRR073315	Gold flowering 1	33.676
	CRR073316	Gold flowering 2	54.905
	CRR073317	Gold flowering 3	41.058
	CRR073318	Tawny withering 1	31.207
	CRR073319	Tawny withering 2	29.738
	CRR073320	Tawny withering 3	29.759