Gene detail

Detail information of GWHGAAZE017006

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355336.1	2.2232E-172	PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Solanum tuberosum]
Swissprot	tr\|Q8LAM0\|UBP4_ARATH	1E-161	Ubiquitin carboxyl-terminal hydrolase 4
trEMBL	tr\|K4BSS7\|K4BSS7_SOLLC	1E-170	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT2G22310.1	1E-129	ubiquitin-specific protease 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89260369	89272790	-
GWHAAZE00000004	mRNA	89260369	89272790	-
GWHAAZE00000004	exon	89272674	89272790	-
GWHAAZE00000004	exon	89269994	89270107	-
GWHAAZE00000004	exon	89266074	89266172	-
GWHAAZE00000004	exon	89263616	89263816	-
GWHAAZE00000004	exon	89260369	89260776	-
GWHAAZE00000004	CDS	89272674	89272790	-
GWHAAZE00000004	CDS	89269994	89270107	-
GWHAAZE00000004	CDS	89266074	89266172	-
GWHAAZE00000004	CDS	89263616	89263816	-
GWHAAZE00000004	CDS	89260369	89260776	-

Transcript Sequence
>GWHTAAZE017026 ATGGGTGTTGCCGGCTCGAAACTCGAGAAAGCTCTAGGCGATCAGTTCCCTGAAGGCGAACGCTACTTCGGCCTCGAGAATTTCGGCAACACTTGCTACTGTAACAGCGTTTTACAGGCACTTTATTTCTGTGTTCCATTCCGTGAACAGTTGATAGAATATTATTCAAATAACAAAAGTCTTGATGCAGAAGAAAATCTCTTAACATGTCTGGCAGACCTATTTATGCAGATAAGTTCACAAAAGAAGAAAACAGGTGTCATTGCTCCAAAGCGCTTTGTACAAAGATTGAAGAAACAAAATGAGATTTTCCGCAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTATTTGCTGAATGAACTAGTTGACATACTGGAGAAAGAGTCTGCTGCAAAGACCACTAATCCAGAAACATCCTCATCACCGCTTGAAAAGATCGCAAATGGACCAACAAAGAATGCTCCTTACGCCAATGGTAGTGCTCAAAAAGAGCCTCTTGTCACCTGGGTCCACAAAAATTTCCAGTTTACAGGAAGCCCAGAAGAGAATGAAGATAAAAAGACACCCCACATCCTAGTGATCCACCTAAAGCGGTTCAAGTACATCGAGCAGCTTAGCAGATACAAGAAGCTCTCGTACCGAGTGGTCTTCCCCCTCGAGCTGAAGCTGAGCAACACAGTCGAGGATGTGGACCCCGAGTACTCTCTCTTTGCCGTGGTGGTCCACGTGGGCAGCGGGCCCAACCACGGTCACTACGTGAGCCTTGTGAAGAGTCACAACCACTGGCTCTTCTTTGATGACGAGAATGTGGAGATGATTGATGAGTCTGCAGTCCAGACTTTCTTCGGGTCTGCCCAAGAGTACTCGAGTAACACGGACCACGGCTATATTTTGTTCTATGAGAGAGTTTCTACTGGTGGTAGCACGAGCTGA

Network for GWHGAAZE017006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	23	302	9.20E-60

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.915
	SRR3591706	second leaf	14.207
	SRR3591707	mature leaf	13.048
	SRR3591708	Shoot apex	17.420
	SRR3591709	Stem	24.015
	SRR3591710	White floral bud	24.332
	SRR3591711	White flower	33.437
	SRR3591712	Green floral bud	29.572
	SRR3591713	Yellow flower	33.149
SRP173429	SRR8316895	Juvenile bud stage	14.897
	SRR8316896	Juvenile bud stage	21.130
	SRR8316897	Juvenile bud stage	11.613
	SRR8316894	Third green stage	8.179
	SRR8316900	Third green stage	26.309
	SRR8316901	Third green stage	28.224
	SRR8316898	Complete white stage	15.051
	SRR8316899	Complete white stage	39.671
	SRR8316903	Complete white stage	22.950
	SRR8316902	Silver flowering stage	17.029
	SRR8316904	Silver flowering stage	18.544
	SRR8316905	Silver flowering stage	8.133
	SRR8316906	Gold flowering stage	29.321
	SRR8316907	Gold flowering stage	23.782
	SRR8316908	Gold flowering stage	27.429
SRP132670	SRR6706286	Control	18.374
	SRR6706287	Light intensity 50%	17.652
	SRR6706288	Light intensity 20%	18.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.531
	CNS0095593	Slightly white alabastrum(diploid) 2	15.204
	CNS0095594	Slightly white alabastrum(diploid) 3	17.338
	CNS0095595	Whole white alabastrum(diploid) 2	17.866
	CNS0095596	Whole white alabastrum(diploid) 3	19.103
	CNS0095597	Whole white alabastrum(diploid) 4	20.377
	CNS0095598	Silvery flower (diploied) 1	17.441
	CNS0095599	Silvery flower (diploied) 2	16.745
	CNS0095600	Silvery flower (diploied) 3	29.196
	CNS0095601	Golden flower (diploid) 1	17.787
	CNS0095602	Golden flower (diploid) 2	27.788
	CNS0095603	Golden flower (diploid) 3	24.430
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.198
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.461
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.778
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.230
	CNS0095610	Silvery flower (tetraploid) 1	21.430
	CNS0095611	Silvery flower (tetraploid) 2	21.189
	CNS0095612	Silvery flower (tetraploid) 3	27.487
	CNS0095613	Golden flower (tetraploid) 1	16.196
	CNS0095614	Golden flower (tetraploid) 2	20.461
	CNS0095615	Golden flower (tetraploid) 3	27.002
CRA001975	CRR073297	Stem 1	18.865
	CRR073298	Stem 2	20.501
	CRR073299	Stem 3	18.473
	CRR073300	Leaf 1	24.861
	CRR073301	Leaf 2	22.833
	CRR073302	Leaf 3	18.901
	CRR073303	Juvenile bud 1	25.863
	CRR073304	Juvenile bud 2	26.017
	CRR073305	Juvenile bud 3	27.847
	CRR073306	Third green 1	29.230
	CRR073307	Third green 2	30.721
	CRR073308	Third green 3	28.191
	CRR073309	Second white 1	21.200
	CRR073310	Second white 2	29.404
	CRR073311	Second white 3	21.517
	CRR073312	Silver flowering 1	23.840
	CRR073313	Silver flowering 2	28.544
	CRR073314	Silver flowering 3	24.990
	CRR073315	Gold flowering 1	10.452
	CRR073316	Gold flowering 2	13.694
	CRR073317	Gold flowering 3	8.784
	CRR073318	Tawny withering 1	21.752
	CRR073319	Tawny withering 2	21.319
	CRR073320	Tawny withering 3	22.178