Detail information of GWHGAAZE017021


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01496.12.4717E-139unnamed protein product [Coffea canephora]
Swissprottr|Q9LX90|PABN3_ARATH8E-122Polyadenylate-binding protein 3 {ECO:0000303|PubMed:18479511}
trEMBLtr|A0A068TZ01|A0A068TZ01_COFCA9E-140Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01496.1}
TAIR10AT5G10350.18E-72RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8980834189814845-
GWHAAZE00000004mRNA8980834189814845-
GWHAAZE00000004exon8981471489814845-
GWHAAZE00000004exon8981446789814569-
GWHAAZE00000004exon8981360489813674-
GWHAAZE00000004exon8980949689809687-
GWHAAZE00000004exon8980932789809398-
GWHAAZE00000004exon8980848889808615-
GWHAAZE00000004exon8980834189808389-
GWHAAZE00000004CDS8981471489814845-
GWHAAZE00000004CDS8981446789814569-
GWHAAZE00000004CDS8981360489813674-
GWHAAZE00000004CDS8980949689809687-
GWHAAZE00000004CDS8980932789809398-
GWHAAZE00000004CDS8980848889808615-
GWHAAZE00000004CDS8980834189808389-
Transcript Sequence

Network for GWHGAAZE017021

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1981665.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14396PABPN1, PABP2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.620
SRR3591706second leaf35.197
SRR3591707mature leaf17.853
SRR3591708Shoot apex76.905
SRR3591709Stem49.456
SRR3591710White floral bud52.613
SRR3591711White flower54.617
SRR3591712Green floral bud57.879
SRR3591713Yellow flower36.404
SRP173429 SRR8316895Juvenile bud stage 73.577
SRR8316896Juvenile bud stage 92.075
SRR8316897Juvenile bud stage 57.114
SRR8316894Third green stage 37.926
SRR8316900Third green stage 110.731
SRR8316901Third green stage 117.137
SRR8316898Complete white stage 30.305
SRR8316899Complete white stage 102.252
SRR8316903Complete white stage 46.548
SRR8316902Silver flowering stage35.983
SRR8316904Silver flowering stage32.365
SRR8316905Silver flowering stage13.624
SRR8316906Gold flowering stage 38.186
SRR8316907Gold flowering stage 50.867
SRR8316908Gold flowering stage 63.584
SRP132670SRR6706286Control132.015
SRR6706287Light intensity 50%134.882
SRR6706288Light intensity 20%143.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1104.851
CNS0095593Slightly white alabastrum(diploid) 2148.966
CNS0095594Slightly white alabastrum(diploid) 3104.005
CNS0095595Whole white alabastrum(diploid) 297.589
CNS0095596Whole white alabastrum(diploid) 3115.507
CNS0095597Whole white alabastrum(diploid) 488.895
CNS0095598Silvery flower (diploied) 167.481
CNS0095599Silvery flower (diploied) 257.539
CNS0095600Silvery flower (diploied) 335.572
CNS0095601Golden flower (diploid) 1104.841
CNS0095602Golden flower (diploid) 243.734
CNS0095603Golden flower (diploid) 349.888
CNS0095604Slightly white alabastrum(tetraploid) 1125.853
CNS0095605Slightly white alabastrum(tetraploid) 2112.121
CNS0095606Slightly white alabastrum(tetraploid) 3179.385
CNS0095607Whole white alabastrum(tetraploid) 177.394
CNS0095608Whole white alabastrum(tetraploid) 259.724
CNS0095609Whole white alabastrum(tetraploid) 3117.784
CNS0095610Silvery flower (tetraploid) 150.675
CNS0095611Silvery flower (tetraploid) 243.746
CNS0095612Silvery flower (tetraploid) 358.830
CNS0095613Golden flower (tetraploid) 125.812
CNS0095614Golden flower (tetraploid) 236.532
CNS0095615Golden flower (tetraploid) 330.720
CRA001975CRR073297Stem 1103.239
CRR073298Stem 2102.375
CRR073299Stem 3105.639
CRR073300Leaf 1106.231
CRR073301Leaf 2109.901
CRR073302Leaf 3110.607
CRR073303Juvenile bud 198.590
CRR073304Juvenile bud 270.859
CRR073305Juvenile bud 371.743
CRR073306Third green 177.331
CRR073307Third green 260.747
CRR073308Third green 363.128
CRR073309Second white 115.723
CRR073310Second white 219.841
CRR073311Second white 38.550
CRR073312Silver flowering 19.315
CRR073313Silver flowering 210.250
CRR073314Silver flowering 38.589
CRR073315Gold flowering 152.509
CRR073316Gold flowering 257.518
CRR073317Gold flowering 338.884
CRR073318Tawny withering 166.592
CRR073319Tawny withering 260.854
CRR073320Tawny withering 358.582