Detail information of GWHGAAZE017026


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275062.19.8292E-13314-3-3-like protein 16R [Solanum tuberosum]
Swissprottr|P93784|14335_SOLTU5E-13514-3-3-like protein 16R
trEMBLtr|Q6H3X8|Q6H3X8_SOLTU4E-13314-3-3 protein isoform 16R {ECO:0000313|EMBL:AAL50217.1}
TAIR10AT1G78300.15E-94general regulatory factor 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8989438189897011+
GWHAAZE00000004mRNA8989438189897011+
GWHAAZE00000004exon8989438189894860+
GWHAAZE00000004exon8989660489896720+
GWHAAZE00000004exon8989695889897011+
GWHAAZE00000004CDS8989438189894860+
GWHAAZE00000004CDS8989660489896720+
GWHAAZE00000004CDS8989695889897011+
Transcript Sequence

Network for GWHGAAZE017026

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00244.212014/3/3111606.50E-59
PF00244.212014/3/31581952.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06630YWHAE MAPK signaling pathway - yeast map04011
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
PI3K-Akt signaling pathwaymap04151
Cell cyclemap04110
Oocyte meiosismap04114
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722

Gene Ontology

GO term OntologyName
GO:0019904molecular_functionprotein domain specific binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf556.742
SRR3591706second leaf181.977
SRR3591707mature leaf93.911
SRR3591708Shoot apex538.235
SRR3591709Stem374.845
SRR3591710White floral bud357.720
SRR3591711White flower428.083
SRR3591712Green floral bud456.155
SRR3591713Yellow flower382.032
SRP173429 SRR8316895Juvenile bud stage 246.045
SRR8316896Juvenile bud stage 363.365
SRR8316897Juvenile bud stage 178.140
SRR8316894Third green stage 159.977
SRR8316900Third green stage 485.441
SRR8316901Third green stage 536.783
SRR8316898Complete white stage 236.620
SRR8316899Complete white stage 696.910
SRR8316903Complete white stage 339.829
SRR8316902Silver flowering stage221.920
SRR8316904Silver flowering stage222.892
SRR8316905Silver flowering stage136.340
SRR8316906Gold flowering stage 366.658
SRR8316907Gold flowering stage 357.688
SRR8316908Gold flowering stage 385.340
SRP132670SRR6706286Control807.183
SRR6706287Light intensity 50%796.865
SRR6706288Light intensity 20%826.523
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1357.802
CNS0095593Slightly white alabastrum(diploid) 2460.289
CNS0095594Slightly white alabastrum(diploid) 3322.561
CNS0095595Whole white alabastrum(diploid) 2328.887
CNS0095596Whole white alabastrum(diploid) 3346.380
CNS0095597Whole white alabastrum(diploid) 4310.722
CNS0095598Silvery flower (diploied) 1251.642
CNS0095599Silvery flower (diploied) 2247.196
CNS0095600Silvery flower (diploied) 3472.919
CNS0095601Golden flower (diploid) 1261.524
CNS0095602Golden flower (diploid) 2416.498
CNS0095603Golden flower (diploid) 3402.732
CNS0095604Slightly white alabastrum(tetraploid) 1468.501
CNS0095605Slightly white alabastrum(tetraploid) 2383.663
CNS0095606Slightly white alabastrum(tetraploid) 3697.941
CNS0095607Whole white alabastrum(tetraploid) 1261.026
CNS0095608Whole white alabastrum(tetraploid) 2215.737
CNS0095609Whole white alabastrum(tetraploid) 3474.802
CNS0095610Silvery flower (tetraploid) 1450.067
CNS0095611Silvery flower (tetraploid) 2501.227
CNS0095612Silvery flower (tetraploid) 3463.132
CNS0095613Golden flower (tetraploid) 1353.295
CNS0095614Golden flower (tetraploid) 2350.285
CNS0095615Golden flower (tetraploid) 3545.446
CRA001975CRR073297Stem 1584.002
CRR073298Stem 2581.291
CRR073299Stem 3816.577
CRR073300Leaf 1812.764
CRR073301Leaf 2800.569
CRR073302Leaf 31009.056
CRR073303Juvenile bud 11024.247
CRR073304Juvenile bud 21024.151
CRR073305Juvenile bud 31134.990
CRR073306Third green 1992.548
CRR073307Third green 2981.490
CRR073308Third green 3802.173
CRR073309Second white 1759.979
CRR073310Second white 2483.631
CRR073311Second white 3391.513
CRR073312Silver flowering 1399.442
CRR073313Silver flowering 2525.585
CRR073314Silver flowering 3298.724
CRR073315Gold flowering 1238.897
CRR073316Gold flowering 2272.133
CRR073317Gold flowering 3330.527
CRR073318Tawny withering 1876.952
CRR073319Tawny withering 2619.393
CRR073320Tawny withering 31005.318