Gene detail

Detail information of GWHGAAZE017044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280684.1	1.45182E-55	PREDICTED: uncharacterized protein LOC100259371 [Vitis vinifera]
trEMBL	tr\|D7SW36\|D7SW36_VITVI	5E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21485.3}
TAIR10	AT4G39630.1	2E-24	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	90356449	90359712	+
GWHAAZE00000004	mRNA	90356449	90359712	+
GWHAAZE00000004	exon	90356449	90356536	+
GWHAAZE00000004	exon	90356646	90356733	+
GWHAAZE00000004	exon	90356843	90357148	+
GWHAAZE00000004	exon	90357251	90357297	+
GWHAAZE00000004	exon	90357949	90358005	+
GWHAAZE00000004	exon	90359506	90359712	+
GWHAAZE00000004	five_prime_UTR	90356449	90356536	+
GWHAAZE00000004	five_prime_UTR	90356646	90356733	+
GWHAAZE00000004	five_prime_UTR	90356843	90356880	+
GWHAAZE00000004	CDS	90356881	90357148	+
GWHAAZE00000004	CDS	90357251	90357297	+
GWHAAZE00000004	CDS	90357949	90358005	+
GWHAAZE00000004	CDS	90359506	90359712	+

Transcript Sequence
>GWHTAAZE017064 TCTCCTGCTAACAACTTACTATATGTCTCTGATCCAGAGGAGCTCCCAGTAGAGAAAAAAGAAGAAGATACATCCATGGACCAGGAAAGGGTTAAGGTTTCGACAATACTGGTGCATTGTTGTGTTAGTGGCCCAACGAGCTTCTTACCACTCCCCCGCCCTTGTTCTCTTGCCTGTTGAACGTCAAATAGCTTCCACAAGGGCCATTCTAGACATGGAAATTGAACATTTACTGAATGCATTGCGTTTGCTCCACTTGAATTTCAGCAAGGAACAGCTTCAGACTCCCGTACTGCAATTTTTTGAGGAAAACTTTCCCAATTTAGAAGTTGTAAGAAATGAAAAAGGGAATACTGAAGTTCAGTGGAAGGAAAAAGGTTTGGCTGATGGAGGAGGAAACATACATGCTGGATTTCTACATAGAATGTCCATGGCCTACTCTGACCCTTCTTTTGGTGGCTTTCAATTTTCTGGTAAAGCAGTGAAAACAAGCTTCCTTGATGCCAAGAATCTGCAAATCAGGAATTTTGATTTACAGGAACCATCTCAGATGCTTGGGCTGCAAGAAGGTCTACAAACTCCCGGGCCAGAGAATGTCCGTGGGGATGGGATGACTCCTAAAACCATAAGGCTTCCGAAGCAGGGTCTATCTGTTCGCGGCTCTCCTCTTGGTGTCTGTAAGGAAGAACAAGAAGACCACAACACGGAAGCAATACATGGTATTCTTCTTCTCTCTCTCTCCCCTGATTTGCAGAGTCAGAAGAGGGTTGAATCGTGGCCAGTGTCACTGTAG

Network for GWHGAAZE017044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.341
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.774
	SRR8316896	Juvenile bud stage	5.627
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	2.583
	SRR8316900	Third green stage	7.991
	SRR8316901	Third green stage	7.694
	SRR8316898	Complete white stage	3.075
	SRR8316899	Complete white stage	11.899
	SRR8316903	Complete white stage	6.708
	SRR8316902	Silver flowering stage	3.463
	SRR8316904	Silver flowering stage	4.308
	SRR8316905	Silver flowering stage	2.721
	SRR8316906	Gold flowering stage	5.528
	SRR8316907	Gold flowering stage	10.984
	SRR8316908	Gold flowering stage	1.792
SRP132670	SRR6706286	Control	3.238
	SRR6706287	Light intensity 50%	3.071
	SRR6706288	Light intensity 20%	3.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.104
	CNS0095593	Slightly white alabastrum(diploid) 2	8.707
	CNS0095594	Slightly white alabastrum(diploid) 3	7.811
	CNS0095595	Whole white alabastrum(diploid) 2	7.968
	CNS0095596	Whole white alabastrum(diploid) 3	9.296
	CNS0095597	Whole white alabastrum(diploid) 4	11.548
	CNS0095598	Silvery flower (diploied) 1	6.908
	CNS0095599	Silvery flower (diploied) 2	5.843
	CNS0095600	Silvery flower (diploied) 3	6.866
	CNS0095601	Golden flower (diploid) 1	5.545
	CNS0095602	Golden flower (diploid) 2	7.102
	CNS0095603	Golden flower (diploid) 3	5.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.113
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.056
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.066
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.549
	CRR073298	Stem 2	2.615
	CRR073299	Stem 3	2.201
	CRR073300	Leaf 1	4.288
	CRR073301	Leaf 2	2.409
	CRR073302	Leaf 3	1.014
	CRR073303	Juvenile bud 1	2.384
	CRR073304	Juvenile bud 2	1.550
	CRR073305	Juvenile bud 3	1.012
	CRR073306	Third green 1	0.912
	CRR073307	Third green 2	1.586
	CRR073308	Third green 3	1.418
	CRR073309	Second white 1	0.628
	CRR073310	Second white 2	1.574
	CRR073311	Second white 3	0.722
	CRR073312	Silver flowering 1	0.787
	CRR073313	Silver flowering 2	1.576
	CRR073314	Silver flowering 3	1.274
	CRR073315	Gold flowering 1	1.757
	CRR073316	Gold flowering 2	1.636
	CRR073317	Gold flowering 3	0.832
	CRR073318	Tawny withering 1	3.643
	CRR073319	Tawny withering 2	2.543
	CRR073320	Tawny withering 3	2.290