Gene detail

Detail information of GWHGAAZE017051

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG03342.1	0	Replication A 70 kDa DNA-binding subunit [Gossypium arboreum]
Swissprot	tr\|Q9SKI4\|RFA1A_ARATH	2E-179	Replication protein A 70 kDa DNA-binding subunit A
trEMBL	tr\|D7TCH6\|D7TCH6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27834.3}
TAIR10	AT2G06510.1	7E-148	replication protein A 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	90565171	90573820	+
GWHAAZE00000004	mRNA	90565171	90573820	+
GWHAAZE00000004	exon	90565171	90565383	+
GWHAAZE00000004	exon	90572416	90573217	+
GWHAAZE00000004	exon	90573397	90573508	+
GWHAAZE00000004	exon	90573601	90573820	+
GWHAAZE00000004	CDS	90565171	90565383	+
GWHAAZE00000004	CDS	90572416	90573217	+
GWHAAZE00000004	CDS	90573397	90573508	+
GWHAAZE00000004	CDS	90573601	90573820	+

Transcript Sequence
>GWHTAAZE017071 ATGCCGGTGAATTTGACGGCGAACACAATTCCGGCAATAATCACCGGAGATGTGAACTCGAAGCCTCTAGTTCAAATACTGGACATCAAACTGATCGGAAATACTCAGGAAAGATATAGGCTTTTGCTATCCGACGCCGTTTCGACTCAGCACGCAATGTTCGCTACTCAGCTCAATGACCGAGTCAAATCCGGCACTCTTCGTAAAGAATCTCCTGCATGCCAACCACCTCCCAATTACAAAAACCACGGGGCAATCATGAAGAATGAAGCCCCAGCACGAATTATTCCCATTGCTGCTTTGAATCCTTATCAAGGTCGGTGGGCAATCAAGGCTAGAGTGACTGCAAAAGGAGATCTCCGCCGCTCCAACAACGCTAGAGGAGATGGTAAGGTCTTCTCTTTCGACCTCCTTGATTCTGATGGAGGTGAAATACGGGTGACTTGCTTCAATGCTGTTGTTGACCATTTTTATGAAACCAATGAGGTCGGTAAAGTTTATGTGATATCAAAAGGTAGCTTAAAACCAGCCCAAAAGACCTTCAATCATTTGAAGAATGAGTGGGAGATATTTCTTGAGAACACTTCAATAGTGGATCTTTGCCCAGAAGAAGATGCCTCGATACCAAGACAGCAGTTCTCGTTCAAGCCCATTAGTGAAATCGAAAATGCTGAGAATAACTCCATATTTGATATTATCGGTGTTGTAATATCTGTGAACCCTTCGGTCCCTATTTTGAGAAAGAACGGTATGGAAACTCAGCGAAGGATTCTGAATCTGAAGGATCAGTCTTTGAAAAGTGTTGAGCTAACACTGTGGGGAGAATTCTGCAACAGAGAAGGCCAAAAGTTTCAAGAAATGATTGACTCTGGCCATTTCCCTGTTTTAGCTGTCAAAGCCGGGAAAGTAAACGATTTAAGTGGAAAATCCATAGGGACAATTTCTTCAACCCAACTCTTTATAGATCCAGATTCTCAAGAGGCTTATGCATTAAGAAACTGGTTTGATCGAGTGGCTTGCCCATTGATGACTGGGGACCGACAATGTAACAAGAAAGTGTCACAGTCAGGTAACTCTAGATGGCAATGCGATAGGTGTAATCAGGAATTTGAGGAGTGTGATTATAGCAAAGGAGTTGTACGTCTGAAATATGAAGAACAAAATGATTCTCAATTTGGGGAAATTATTAAGGGTGGTTTGTTTTCGCAGTATATGTTTCGTCACAAAATTAAAGAGGAAATGTATGGGGATGAACAGAGGGTGAAGGTTACTGTTGTGAAGGCCGAGAAGGTGAATTATTCTTCAGAGAGTAGATATTTGCTGGATTTGATTACCAAACGTCATTGA

Network for GWHGAAZE017051

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04057.13	Rep-A_N	5	71	2.80E-17
PF01336.26	tRNA_anti-codon	109	193	1.60E-08
PF16900.6	REPA_OB_2	218	322	3.90E-28
PF08646.11	Rep_fac-A_C	383	440	1.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.068
	SRR3591706	second leaf	0.117
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.027
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.175
	SRR8316896	Juvenile bud stage	3.461
	SRR8316897	Juvenile bud stage	1.126
	SRR8316894	Third green stage	1.356
	SRR8316900	Third green stage	3.007
	SRR8316901	Third green stage	3.171
	SRR8316898	Complete white stage	1.177
	SRR8316899	Complete white stage	3.316
	SRR8316903	Complete white stage	1.924
	SRR8316902	Silver flowering stage	1.270
	SRR8316904	Silver flowering stage	1.665
	SRR8316905	Silver flowering stage	0.326
	SRR8316906	Gold flowering stage	1.656
	SRR8316907	Gold flowering stage	2.013
	SRR8316908	Gold flowering stage	1.570
SRP132670	SRR6706286	Control	1.189
	SRR6706287	Light intensity 50%	1.032
	SRR6706288	Light intensity 20%	1.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.320
	CNS0095593	Slightly white alabastrum(diploid) 2	2.591
	CNS0095594	Slightly white alabastrum(diploid) 3	1.737
	CNS0095595	Whole white alabastrum(diploid) 2	1.920
	CNS0095596	Whole white alabastrum(diploid) 3	1.938
	CNS0095597	Whole white alabastrum(diploid) 4	2.070
	CNS0095598	Silvery flower (diploied) 1	1.272
	CNS0095599	Silvery flower (diploied) 2	1.681
	CNS0095600	Silvery flower (diploied) 3	2.320
	CNS0095601	Golden flower (diploid) 1	1.495
	CNS0095602	Golden flower (diploid) 2	2.329
	CNS0095603	Golden flower (diploid) 3	2.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.076
	CNS0095611	Silvery flower (tetraploid) 2	0.047
	CNS0095612	Silvery flower (tetraploid) 3	0.008
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.781
	CRR073298	Stem 2	2.761
	CRR073299	Stem 3	1.468
	CRR073300	Leaf 1	1.708
	CRR073301	Leaf 2	2.636
	CRR073302	Leaf 3	0.532
	CRR073303	Juvenile bud 1	0.799
	CRR073304	Juvenile bud 2	0.426
	CRR073305	Juvenile bud 3	0.996
	CRR073306	Third green 1	0.319
	CRR073307	Third green 2	0.516
	CRR073308	Third green 3	0.432
	CRR073309	Second white 1	0.547
	CRR073310	Second white 2	0.663
	CRR073311	Second white 3	0.260
	CRR073312	Silver flowering 1	0.603
	CRR073313	Silver flowering 2	0.565
	CRR073314	Silver flowering 3	0.364
	CRR073315	Gold flowering 1	0.703
	CRR073316	Gold flowering 2	1.537
	CRR073317	Gold flowering 3	0.169
	CRR073318	Tawny withering 1	0.840
	CRR073319	Tawny withering 2	2.248
	CRR073320	Tawny withering 3	1.151