Gene detail

Detail information of GWHGAAZE017066

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33886.1	0	hypothetical protein JCGZ_07457 [Jatropha curcas]
Swissprot	tr\|Q8GZ92\|BRXL4_ARATH	2E-148	Protein Brevis radix-like 4
trEMBL	tr\|A0A067KCD9\|A0A067KCD9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33886.1}
TAIR10	AT5G20540.1	9E-119	BREVIS RADIX-like 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	90909794	90915454	-
GWHAAZE00000004	mRNA	90909794	90915454	-
GWHAAZE00000004	exon	90915332	90915454	-
GWHAAZE00000004	exon	90913990	90914360	-
GWHAAZE00000004	exon	90910996	90911131	-
GWHAAZE00000004	exon	90910044	90910444	-
GWHAAZE00000004	exon	90909794	90909872	-
GWHAAZE00000004	CDS	90915332	90915454	-
GWHAAZE00000004	CDS	90913990	90914360	-
GWHAAZE00000004	CDS	90910996	90911131	-
GWHAAZE00000004	CDS	90910044	90910444	-
GWHAAZE00000004	CDS	90909794	90909872	-

Transcript Sequence
>GWHTAAZE017086 ATGCTTACATGCTTGCCTCGTTCGAAGCATTCCAACAATGAATCACTCGATGATGAACATATCGAAGTAAGCTCCAATGCCACCCCTGCTACTAAACAAGCCATCAGAACTCTCACTTCTCAGATCAAAGACATGGCATTGAAGGCATCAGGGCCATGTACAGGTCCCCCAACTCACCAGAGGCAGAGAAGTCACACCTCGTCGGAATCTCCGTCGGAGAGGTTCCGGTGGTCTCTCCGTCGAAACGGGAGTTCGAATTCCAGATCGGAGGCGGTGAACGGGAGGGTGTGGGGGAAGGAAATGGAGGCGAGGCTGAAGGGTATTTCGAGTGGAGAGGGTACGCTGGCATCTTCGGCTAGTGGCCGCCGGCCGGTGGTTGTGTTAGTGGAGGAAAAGGACCCGCAAGAATGGGTTGCTCAGATAGAGTCTGGTGTTTTAATAACGTTTGTCTCACTTCCACGTGGCGGTAATGATCTTAAGCGAATTCGGTTCAGTCGAGAAATGTTCAACAAATGGCAAGCACAGAGATGGTGGGTAGAGAATTATGACAAAGTAATGGAACTTTACAATGTGCAAAAATTAAACCGTCATGCTTTTCCTCTTCCAACTCCTCCGAGATCCGAAGATGAGAATTTGAAAATGGAGCCCGTGGCAGATAGCCCTGTAACACCCCCTTTAGGTAGTGAACGCCTACCTCGCACATTATACCATCCTACAGGAATGGGAATGAGCTACTCGTCATCAGATTCACTTGATCAACACCATCCCATGCAGTCGCGCTTTAACGACTCTTGCGCTCTCACTACAACTCCAAAGCACTCAAGTATTAGTGGGGCTAAGACAGAAACATCATCGATGGATGCGTCTATCAGAACCAGTTCATCTAGAGACGTAGATTGCTCTGAAGAGTTATCTATTAGCAATGCCAGTGATGTAGAGACGGAATGGGTTGAACAAGATGAACCGGGAGTATACATTACTATCAAAGCTCTGCCAACGGGTGCACGAGAACTCAGACGTGTCAGATTCAGCCGAGAGAAGTTTGGGGAGATACATGCTAGACTTTGGTGGGAAGAGAACCGAGCTCGTGTACATAAACAATACCTCTGA

Network for GWHGAAZE017066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0096

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13713.7	BRX_N	25	51	3.00E-10
PF08381.12	BRX	135	189	4.40E-26
PF08381.12	BRX	313	368	3.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.681
	SRR3591706	second leaf	0.507
	SRR3591707	mature leaf	0.476
	SRR3591708	Shoot apex	1.180
	SRR3591709	Stem	9.263
	SRR3591710	White floral bud	0.939
	SRR3591711	White flower	6.111
	SRR3591712	Green floral bud	0.554
	SRR3591713	Yellow flower	1.007
SRP173429	SRR8316895	Juvenile bud stage	0.115
	SRR8316896	Juvenile bud stage	0.020
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.129
	SRR8316900	Third green stage	0.261
	SRR8316901	Third green stage	0.077
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.126
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.516
	SRR8316905	Silver flowering stage	0.077
	SRR8316906	Gold flowering stage	0.136
	SRR8316907	Gold flowering stage	0.208
	SRR8316908	Gold flowering stage	0.535
SRP132670	SRR6706286	Control	0.048
	SRR6706287	Light intensity 50%	0.123
	SRR6706288	Light intensity 20%	0.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.204
	CNS0095593	Slightly white alabastrum(diploid) 2	0.134
	CNS0095594	Slightly white alabastrum(diploid) 3	0.268
	CNS0095595	Whole white alabastrum(diploid) 2	0.104
	CNS0095596	Whole white alabastrum(diploid) 3	0.196
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.231
	CNS0095599	Silvery flower (diploied) 2	0.019
	CNS0095600	Silvery flower (diploied) 3	0.044
	CNS0095601	Golden flower (diploid) 1	0.075
	CNS0095602	Golden flower (diploid) 2	0.178
	CNS0095603	Golden flower (diploid) 3	0.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.066
	CNS0095610	Silvery flower (tetraploid) 1	0.125
	CNS0095611	Silvery flower (tetraploid) 2	0.059
	CNS0095612	Silvery flower (tetraploid) 3	0.053
	CNS0095613	Golden flower (tetraploid) 1	0.196
	CNS0095614	Golden flower (tetraploid) 2	0.074
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.057
	CRR073299	Stem 3	0.024
	CRR073300	Leaf 1	0.188
	CRR073301	Leaf 2	0.083
	CRR073302	Leaf 3	0.033
	CRR073303	Juvenile bud 1	0.017
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.104
	CRR073306	Third green 1	0.782
	CRR073307	Third green 2	1.033
	CRR073308	Third green 3	0.829
	CRR073309	Second white 1	2.498
	CRR073310	Second white 2	1.482
	CRR073311	Second white 3	5.863
	CRR073312	Silver flowering 1	7.254
	CRR073313	Silver flowering 2	7.085
	CRR073314	Silver flowering 3	5.411
	CRR073315	Gold flowering 1	1.040
	CRR073316	Gold flowering 2	1.332
	CRR073317	Gold flowering 3	0.266
	CRR073318	Tawny withering 1	5.239
	CRR073319	Tawny withering 2	4.609
	CRR073320	Tawny withering 3	7.157