Gene detail

Detail information of GWHGAAZE017078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14598.1	5.1822E-154	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SZB9\|PER47_ARATH	4E-128	Peroxidase 47 (Precursor)
trEMBL	tr\|A0A068V3Z9\|A0A068V3Z9_COFCA	2E-154	Coffea canephora DH200=94 genomic scaffold, scaffold_88 {ECO:0000313\|EMBL:CDP14598.1}
TAIR10	AT4G33420.1	3E-93	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91155105	91157838	+
GWHAAZE00000004	mRNA	91155105	91157838	+
GWHAAZE00000004	exon	91155105	91155119	+
GWHAAZE00000004	exon	91156179	91156367	+
GWHAAZE00000004	exon	91156682	91156844	+
GWHAAZE00000004	exon	91157369	91157838	+
GWHAAZE00000004	CDS	91155105	91155119	+
GWHAAZE00000004	CDS	91156179	91156367	+
GWHAAZE00000004	CDS	91156682	91156844	+
GWHAAZE00000004	CDS	91157369	91157838	+

Transcript Sequence
>GWHTAAZE017098 ATGCAAATAATTTTGGGATGTGATGCGTCAATTTTGATAGATTCAACTAAGGGTAACACAGCAGAGAAAGACTCCCCAGCAAATTTGAGTTTAAGGGGATACGAAATAATTGACGATGTGAAAGAACAACTTGAAAGGGAATGTCCCGGTATTGTTTCATGTGCTGATATTGTCGCAATGGCCGCTAGGGAAGCAGTTTTCTTTGCAGGGGGTCCAGTGTATGACATACCAAAAGGGAGAAAAGATGGAAGCAGGTCCAAAATAGAAGACACAATCAACTTGCCTGCACCCACTCTCAATAGCTCCGAGCTCATCAAGATGTTTGGCCAGCATGGTTTTACTGCTCAAGAAATGGTGGCTTTATCAGGGGCACACACACTAGGTGTAGCAAGGTGCTCATCGTTCAAGAACCGGCTGAGTAACTTTGACTCAACCCACGACGTTGATCCCGACATCGACACGCAGTTTCTTAAAACATTGACGAAAACGTGCAAGGCTGGCGACAATGCGGAGCAGCCTTTCGATTCCACCCGAAACACATTCGATAACAACTATTACAATGGCTTGCAAAGGAAAGTTGGACTACTCTCTTCTGACCAAACTTTATTTGCATCGGCCAGAACAAGAGGAATTGTCAATGGCTATGCGATGAATCAAGCCATGTTTTTCTTCGATTTTCAACAAGCCATGGTCAAGATGGGCTTGCTTGATGTTTTAGAGTCTCCCAATGGAGAAGTGCGACGTAATTGCCGTCAAGTCAACAAATGATCATCATCATTAGCACCATCATGTCGTCATCGTCTTCATCATCATCATTTATGTACGTACTATAGCTAG

Network for GWHGAAZE017078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	6	217	4.10E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.727
	SRR3591706	second leaf	17.330
	SRR3591707	mature leaf	5.807
	SRR3591708	Shoot apex	7.890
	SRR3591709	Stem	57.274
	SRR3591710	White floral bud	17.762
	SRR3591711	White flower	3.602
	SRR3591712	Green floral bud	13.162
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	11.603
	SRR8316896	Juvenile bud stage	10.666
	SRR8316897	Juvenile bud stage	11.257
	SRR8316894	Third green stage	6.312
	SRR8316900	Third green stage	20.013
	SRR8316901	Third green stage	17.102
	SRR8316898	Complete white stage	16.198
	SRR8316899	Complete white stage	79.491
	SRR8316903	Complete white stage	21.104
	SRR8316902	Silver flowering stage	13.591
	SRR8316904	Silver flowering stage	7.233
	SRR8316905	Silver flowering stage	2.180
	SRR8316906	Gold flowering stage	1.100
	SRR8316907	Gold flowering stage	1.810
	SRR8316908	Gold flowering stage	6.519
SRP132670	SRR6706286	Control	14.779
	SRR6706287	Light intensity 50%	16.539
	SRR6706288	Light intensity 20%	16.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.073
	CNS0095593	Slightly white alabastrum(diploid) 2	8.663
	CNS0095594	Slightly white alabastrum(diploid) 3	7.716
	CNS0095595	Whole white alabastrum(diploid) 2	4.872
	CNS0095596	Whole white alabastrum(diploid) 3	3.796
	CNS0095597	Whole white alabastrum(diploid) 4	3.634
	CNS0095598	Silvery flower (diploied) 1	9.503
	CNS0095599	Silvery flower (diploied) 2	8.346
	CNS0095600	Silvery flower (diploied) 3	7.511
	CNS0095601	Golden flower (diploid) 1	3.449
	CNS0095602	Golden flower (diploid) 2	4.304
	CNS0095603	Golden flower (diploid) 3	3.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.927
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.674
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.896
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.024
	CNS0095610	Silvery flower (tetraploid) 1	9.576
	CNS0095611	Silvery flower (tetraploid) 2	3.216
	CNS0095612	Silvery flower (tetraploid) 3	1.420
	CNS0095613	Golden flower (tetraploid) 1	0.581
	CNS0095614	Golden flower (tetraploid) 2	0.297
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	13.940
	CRR073298	Stem 2	10.407
	CRR073299	Stem 3	28.946
	CRR073300	Leaf 1	13.834
	CRR073301	Leaf 2	15.273
	CRR073302	Leaf 3	26.786
	CRR073303	Juvenile bud 1	20.713
	CRR073304	Juvenile bud 2	14.373
	CRR073305	Juvenile bud 3	35.724
	CRR073306	Third green 1	23.037
	CRR073307	Third green 2	33.035
	CRR073308	Third green 3	38.119
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.376
	CRR073311	Second white 3	0.080
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	23.418
	CRR073316	Gold flowering 2	29.954
	CRR073317	Gold flowering 3	23.188
	CRR073318	Tawny withering 1	124.479
	CRR073319	Tawny withering 2	62.477
	CRR073320	Tawny withering 3	160.236