Detail information of GWHGAAZE017085


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009606305.15.83104E-68PREDICTED: uncharacterized protein LOC104100707 [Nicotiana tomentosiformis]
Swissprottr|F4KBP5|CHR4_ARATH0.0000004Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A068ULS1|A0A068ULS1_COFCA7E-65Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313|EMBL:CDP09207.1}
TAIR10AT5G58610.16E-37PHD finger transcription factor, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9130333391305345+
GWHAAZE00000004mRNA9130333391305345+
GWHAAZE00000004exon9130333391304556+
GWHAAZE00000004exon9130501391305345+
GWHAAZE00000004CDS9130333391304556+
GWHAAZE00000004CDS9130501391305345+
Transcript Sequence

Network for GWHGAAZE017085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16135.6TDBD3053543.50E-22
PF00628.30PHD3814221.70E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.603
SRR3591706second leaf0.499
SRR3591707mature leaf0.104
SRR3591708Shoot apex3.823
SRR3591709Stem0.175
SRR3591710White floral bud0.776
SRR3591711White flower0.927
SRR3591712Green floral bud1.150
SRR3591713Yellow flower0.133
SRP173429 SRR8316895Juvenile bud stage 1.287
SRR8316896Juvenile bud stage 1.227
SRR8316897Juvenile bud stage 0.581
SRR8316894Third green stage 0.858
SRR8316900Third green stage 2.253
SRR8316901Third green stage 1.009
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.059
SRR8316903Complete white stage 0.586
SRR8316902Silver flowering stage0.144
SRR8316904Silver flowering stage0.001
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.051
SRR8316907Gold flowering stage 0.073
SRR8316908Gold flowering stage 0.046
SRP132670SRR6706286Control1.046
SRR6706287Light intensity 50%1.051
SRR6706288Light intensity 20%0.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.255
CNS0095593Slightly white alabastrum(diploid) 21.538
CNS0095594Slightly white alabastrum(diploid) 31.120
CNS0095595Whole white alabastrum(diploid) 21.273
CNS0095596Whole white alabastrum(diploid) 31.696
CNS0095597Whole white alabastrum(diploid) 41.705
CNS0095598Silvery flower (diploied) 11.451
CNS0095599Silvery flower (diploied) 20.807
CNS0095600Silvery flower (diploied) 30.639
CNS0095601Golden flower (diploid) 11.070
CNS0095602Golden flower (diploid) 20.911
CNS0095603Golden flower (diploid) 30.875
CNS0095604Slightly white alabastrum(tetraploid) 11.817
CNS0095605Slightly white alabastrum(tetraploid) 22.074
CNS0095606Slightly white alabastrum(tetraploid) 34.386
CNS0095607Whole white alabastrum(tetraploid) 10.971
CNS0095608Whole white alabastrum(tetraploid) 20.290
CNS0095609Whole white alabastrum(tetraploid) 32.196
CNS0095610Silvery flower (tetraploid) 10.404
CNS0095611Silvery flower (tetraploid) 20.803
CNS0095612Silvery flower (tetraploid) 30.413
CNS0095613Golden flower (tetraploid) 10.023
CNS0095614Golden flower (tetraploid) 20.364
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.498
CRR073298Stem 22.107
CRR073299Stem 30.954
CRR073300Leaf 10.972
CRR073301Leaf 21.201
CRR073302Leaf 31.450
CRR073303Juvenile bud 10.361
CRR073304Juvenile bud 20.186
CRR073305Juvenile bud 30.714
CRR073306Third green 10.000
CRR073307Third green 20.026
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.037
CRR073311Second white 30.000
CRR073312Silver flowering 10.002
CRR073313Silver flowering 20.003
CRR073314Silver flowering 30.121
CRR073315Gold flowering 10.058
CRR073316Gold flowering 20.980
CRR073317Gold flowering 30.090
CRR073318Tawny withering 11.058
CRR073319Tawny withering 20.259
CRR073320Tawny withering 30.012