Detail information of GWHGAAZE017092


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011019339.14.0144E-179PREDICTED: methylthioribose-1-phosphate isomerase [Populus euphratica]
Swissprottr|B9HCR2|MTNA_POPTR7E-178Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_03119}
trEMBLtr|A0A022QHZ8|A0A022QHZ8_ERYGU4E-178Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_03119}
TAIR10AT2G05830.44E-116NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9145438191460844-
GWHAAZE00000004mRNA9145438191460844-
GWHAAZE00000004exon9146070291460844-
GWHAAZE00000004exon9145975691459855-
GWHAAZE00000004exon9145926591459407-
GWHAAZE00000004exon9145847791458582-
GWHAAZE00000004exon9145831491458382-
GWHAAZE00000004exon9145678491456922-
GWHAAZE00000004exon9145585491456122-
GWHAAZE00000004exon9145438191454729-
GWHAAZE00000004CDS9146070291460844-
GWHAAZE00000004CDS9145975691459855-
GWHAAZE00000004CDS9145926591459407-
GWHAAZE00000004CDS9145847791458582-
GWHAAZE00000004CDS9145831491458382-
GWHAAZE00000004CDS9145678491456922-
GWHAAZE00000004CDS9145585491456122-
GWHAAZE00000004CDS9145464691454729-
GWHAAZE00000004three_prime_UTR9145438191454645-
Transcript Sequence

Network for GWHGAAZE017092

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.18IF-2B31651.60E-19
PF01008.18IF-2B1873272.60E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08963mtnA Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0044249biological_processcellular biosynthetic process
GO:0044237biological_processcellular metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.580
SRR3591706second leaf22.720
SRR3591707mature leaf26.542
SRR3591708Shoot apex33.493
SRR3591709Stem109.886
SRR3591710White floral bud91.759
SRR3591711White flower81.544
SRR3591712Green floral bud73.465
SRR3591713Yellow flower56.515
SRP173429 SRR8316895Juvenile bud stage 44.978
SRR8316896Juvenile bud stage 61.631
SRR8316897Juvenile bud stage 31.826
SRR8316894Third green stage 23.870
SRR8316900Third green stage 83.029
SRR8316901Third green stage 71.153
SRR8316898Complete white stage 56.046
SRR8316899Complete white stage 127.511
SRR8316903Complete white stage 70.042
SRR8316902Silver flowering stage44.017
SRR8316904Silver flowering stage57.315
SRR8316905Silver flowering stage28.465
SRR8316906Gold flowering stage 80.842
SRR8316907Gold flowering stage 75.397
SRR8316908Gold flowering stage 82.385
SRP132670SRR6706286Control64.566
SRR6706287Light intensity 50%64.781
SRR6706288Light intensity 20%70.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 166.280
CNS0095593Slightly white alabastrum(diploid) 274.583
CNS0095594Slightly white alabastrum(diploid) 368.693
CNS0095595Whole white alabastrum(diploid) 261.665
CNS0095596Whole white alabastrum(diploid) 365.401
CNS0095597Whole white alabastrum(diploid) 468.219
CNS0095598Silvery flower (diploied) 161.513
CNS0095599Silvery flower (diploied) 261.104
CNS0095600Silvery flower (diploied) 398.539
CNS0095601Golden flower (diploid) 159.601
CNS0095602Golden flower (diploid) 274.989
CNS0095603Golden flower (diploid) 368.398
CNS0095604Slightly white alabastrum(tetraploid) 170.124
CNS0095605Slightly white alabastrum(tetraploid) 260.209
CNS0095606Slightly white alabastrum(tetraploid) 383.814
CNS0095607Whole white alabastrum(tetraploid) 161.328
CNS0095608Whole white alabastrum(tetraploid) 260.942
CNS0095609Whole white alabastrum(tetraploid) 386.554
CNS0095610Silvery flower (tetraploid) 1112.172
CNS0095611Silvery flower (tetraploid) 297.362
CNS0095612Silvery flower (tetraploid) 3126.502
CNS0095613Golden flower (tetraploid) 167.010
CNS0095614Golden flower (tetraploid) 287.020
CNS0095615Golden flower (tetraploid) 353.257
CRA001975CRR073297Stem 173.927
CRR073298Stem 263.634
CRR073299Stem 363.947
CRR073300Leaf 185.820
CRR073301Leaf 280.401
CRR073302Leaf 381.526
CRR073303Juvenile bud 1102.256
CRR073304Juvenile bud 2103.035
CRR073305Juvenile bud 3102.037
CRR073306Third green 1108.300
CRR073307Third green 2107.884
CRR073308Third green 399.666
CRR073309Second white 181.096
CRR073310Second white 274.497
CRR073311Second white 358.479
CRR073312Silver flowering 145.913
CRR073313Silver flowering 247.520
CRR073314Silver flowering 340.558
CRR073315Gold flowering 123.022
CRR073316Gold flowering 226.488
CRR073317Gold flowering 327.037
CRR073318Tawny withering 179.118
CRR073319Tawny withering 295.738
CRR073320Tawny withering 385.548