Detail information of GWHGAAZE017096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002516245.13.0899E-153chlorophyll A/B binding protein, putative [Ricinus communis]
Swissprottr|P13869|CB12_PETHY2E-104Chlorophyll a-b binding protein, chloroplastic (Precursor)
trEMBLtr|B9RR76|B9RR76_RICCO1E-153Chlorophyll A/B binding protein, putative {ECO:0000313|EMBL:EEF46247.1}
TAIR10AT1G19150.15E-109photosystem I light harvesting complex gene 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9156433491567486-
GWHAAZE00000004mRNA9156433491567486-
GWHAAZE00000004exon9156433491564866-
GWHAAZE00000004exon9156533291565369-
GWHAAZE00000004exon9156710691567279-
GWHAAZE00000004exon9156744091567486-
GWHAAZE00000004CDS9156744091567486-
GWHAAZE00000004CDS9156710691567279-
GWHAAZE00000004CDS9156533291565369-
GWHAAZE00000004CDS9156433491564866-
Transcript Sequence

Network for GWHGAAZE017096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind672336.10E-53
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08908LHCA2 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.532
SRR3591706second leaf359.114
SRR3591707mature leaf412.242
SRR3591708Shoot apex119.851
SRR3591709Stem65.973
SRR3591710White floral bud5.670
SRR3591711White flower11.396
SRR3591712Green floral bud5.279
SRR3591713Yellow flower0.363
SRP173429 SRR8316895Juvenile bud stage 31.619
SRR8316896Juvenile bud stage 24.841
SRR8316897Juvenile bud stage 23.261
SRR8316894Third green stage 9.098
SRR8316900Third green stage 18.835
SRR8316901Third green stage 16.915
SRR8316898Complete white stage 1.954
SRR8316899Complete white stage 4.355
SRR8316903Complete white stage 4.857
SRR8316902Silver flowering stage0.579
SRR8316904Silver flowering stage0.365
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.099
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control18.141
SRR6706287Light intensity 50%11.273
SRR6706288Light intensity 20%9.188
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.208
CNS0095593Slightly white alabastrum(diploid) 212.612
CNS0095594Slightly white alabastrum(diploid) 312.405
CNS0095595Whole white alabastrum(diploid) 28.130
CNS0095596Whole white alabastrum(diploid) 37.865
CNS0095597Whole white alabastrum(diploid) 46.191
CNS0095598Silvery flower (diploied) 143.015
CNS0095599Silvery flower (diploied) 236.814
CNS0095600Silvery flower (diploied) 36.693
CNS0095601Golden flower (diploid) 138.239
CNS0095602Golden flower (diploid) 216.131
CNS0095603Golden flower (diploid) 314.866
CNS0095604Slightly white alabastrum(tetraploid) 114.371
CNS0095605Slightly white alabastrum(tetraploid) 221.696
CNS0095606Slightly white alabastrum(tetraploid) 316.549
CNS0095607Whole white alabastrum(tetraploid) 15.109
CNS0095608Whole white alabastrum(tetraploid) 23.093
CNS0095609Whole white alabastrum(tetraploid) 311.614
CNS0095610Silvery flower (tetraploid) 10.277
CNS0095611Silvery flower (tetraploid) 22.900
CNS0095612Silvery flower (tetraploid) 30.538
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.070
CRA001975CRR073297Stem 141.134
CRR073298Stem 232.327
CRR073299Stem 352.501
CRR073300Leaf 15.514
CRR073301Leaf 210.107
CRR073302Leaf 38.964
CRR073303Juvenile bud 13.908
CRR073304Juvenile bud 23.002
CRR073305Juvenile bud 34.825
CRR073306Third green 10.116
CRR073307Third green 20.065
CRR073308Third green 30.354
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.069
CRR073313Silver flowering 20.272
CRR073314Silver flowering 30.184
CRR073315Gold flowering 1431.219
CRR073316Gold flowering 2431.806
CRR073317Gold flowering 3284.894
CRR073318Tawny withering 131.973
CRR073319Tawny withering 247.959
CRR073320Tawny withering 331.901