Detail information of GWHGAAZE017120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273836.20PREDICTED: conserved oligomeric Golgi complex subunit 3 [Vitis vinifera]
trEMBLtr|D7TC86|D7TC86_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI27744.3}
TAIR10AT1G73430.20sec34-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9213160792157142-
GWHAAZE00000004mRNA9213160792157142-
GWHAAZE00000004exon9215701492157142-
GWHAAZE00000004exon9215616892156251-
GWHAAZE00000004exon9215594892156055-
GWHAAZE00000004exon9215517292155216-
GWHAAZE00000004exon9215500592155079-
GWHAAZE00000004exon9215480092154895-
GWHAAZE00000004exon9215399692154073-
GWHAAZE00000004exon9215357292153657-
GWHAAZE00000004exon9215316592153231-
GWHAAZE00000004exon9215294992153011-
GWHAAZE00000004exon9215275992152860-
GWHAAZE00000004exon9215254092152644-
GWHAAZE00000004exon9215232592152417-
GWHAAZE00000004exon9215158692151674-
GWHAAZE00000004exon9214480492145023-
GWHAAZE00000004exon9214341092143496-
GWHAAZE00000004exon9214315092143269-
GWHAAZE00000004exon9214300492143036-
GWHAAZE00000004exon9213688092136966-
GWHAAZE00000004exon9213651192136627-
GWHAAZE00000004exon9213588192135973-
GWHAAZE00000004exon9213289692133021-
GWHAAZE00000004exon9213218392132283-
GWHAAZE00000004exon9213160792131742-
GWHAAZE00000004CDS9215701492157142-
GWHAAZE00000004CDS9215616892156251-
GWHAAZE00000004CDS9215594892156055-
GWHAAZE00000004CDS9215517292155216-
GWHAAZE00000004CDS9215500592155079-
GWHAAZE00000004CDS9215480092154895-
GWHAAZE00000004CDS9215399692154073-
GWHAAZE00000004CDS9215357292153657-
GWHAAZE00000004CDS9215316592153231-
GWHAAZE00000004CDS9215294992153011-
GWHAAZE00000004CDS9215275992152860-
GWHAAZE00000004CDS9215254092152644-
GWHAAZE00000004CDS9215232592152417-
GWHAAZE00000004CDS9215158692151674-
GWHAAZE00000004CDS9214480492145023-
GWHAAZE00000004CDS9214341092143496-
GWHAAZE00000004CDS9214315092143269-
GWHAAZE00000004CDS9214300492143036-
GWHAAZE00000004CDS9213688092136966-
GWHAAZE00000004CDS9213651192136627-
GWHAAZE00000004CDS9213588192135973-
GWHAAZE00000004CDS9213289692133021-
GWHAAZE00000004CDS9213218392132283-
GWHAAZE00000004CDS9213160792131742-
Transcript Sequence

Network for GWHGAAZE017120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0103


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04136.16Sec341302771.30E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0005801cellular_componentcis-Golgi network
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.960
SRR3591706second leaf7.749
SRR3591707mature leaf7.886
SRR3591708Shoot apex11.620
SRR3591709Stem12.427
SRR3591710White floral bud9.442
SRR3591711White flower10.721
SRR3591712Green floral bud12.569
SRR3591713Yellow flower11.351
SRP173429 SRR8316895Juvenile bud stage 12.980
SRR8316896Juvenile bud stage 19.507
SRR8316897Juvenile bud stage 8.716
SRR8316894Third green stage 8.109
SRR8316900Third green stage 19.898
SRR8316901Third green stage 20.615
SRR8316898Complete white stage 3.802
SRR8316899Complete white stage 16.259
SRR8316903Complete white stage 9.137
SRR8316902Silver flowering stage7.527
SRR8316904Silver flowering stage11.045
SRR8316905Silver flowering stage4.001
SRR8316906Gold flowering stage 15.341
SRR8316907Gold flowering stage 11.960
SRR8316908Gold flowering stage 14.804
SRP132670SRR6706286Control10.954
SRR6706287Light intensity 50%10.625
SRR6706288Light intensity 20%12.729
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.919
CNS0095593Slightly white alabastrum(diploid) 214.328
CNS0095594Slightly white alabastrum(diploid) 315.740
CNS0095595Whole white alabastrum(diploid) 212.939
CNS0095596Whole white alabastrum(diploid) 313.195
CNS0095597Whole white alabastrum(diploid) 410.192
CNS0095598Silvery flower (diploied) 113.305
CNS0095599Silvery flower (diploied) 210.293
CNS0095600Silvery flower (diploied) 315.463
CNS0095601Golden flower (diploid) 19.037
CNS0095602Golden flower (diploid) 214.050
CNS0095603Golden flower (diploid) 314.166
CNS0095604Slightly white alabastrum(tetraploid) 117.221
CNS0095605Slightly white alabastrum(tetraploid) 215.529
CNS0095606Slightly white alabastrum(tetraploid) 318.402
CNS0095607Whole white alabastrum(tetraploid) 110.607
CNS0095608Whole white alabastrum(tetraploid) 28.502
CNS0095609Whole white alabastrum(tetraploid) 317.028
CNS0095610Silvery flower (tetraploid) 114.859
CNS0095611Silvery flower (tetraploid) 215.784
CNS0095612Silvery flower (tetraploid) 314.013
CNS0095613Golden flower (tetraploid) 17.874
CNS0095614Golden flower (tetraploid) 212.254
CNS0095615Golden flower (tetraploid) 312.981
CRA001975CRR073297Stem 114.799
CRR073298Stem 213.715
CRR073299Stem 312.205
CRR073300Leaf 114.330
CRR073301Leaf 215.141
CRR073302Leaf 311.899
CRR073303Juvenile bud 113.286
CRR073304Juvenile bud 28.874
CRR073305Juvenile bud 316.318
CRR073306Third green 12.916
CRR073307Third green 23.105
CRR073308Third green 33.760
CRR073309Second white 14.959
CRR073310Second white 24.822
CRR073311Second white 36.505
CRR073312Silver flowering 15.278
CRR073313Silver flowering 23.529
CRR073314Silver flowering 34.341
CRR073315Gold flowering 19.601
CRR073316Gold flowering 215.425
CRR073317Gold flowering 37.920
CRR073318Tawny withering 117.122
CRR073319Tawny withering 222.594
CRR073320Tawny withering 319.818