Gene detail

Detail information of GWHGAAZE017127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006452920.1	5.6581E-149	hypothetical protein CICLE_v10007313mg [Citrus clementina]
Swissprot	tr\|Q9SMZ4\|AASS_ARATH	1E-138	Saccharopine dehydrogenase
trEMBL	tr\|V4UPG9\|V4UPG9_9ROSI	2E-149	Uncharacterized protein {ECO:0000313\|EMBL:ESR66160.1}
TAIR10	AT4G33150.2	5E-122	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	92307494	92311560	+
GWHAAZE00000004	mRNA	92307494	92311560	+
GWHAAZE00000004	exon	92307494	92307742	+
GWHAAZE00000004	exon	92307825	92307911	+
GWHAAZE00000004	exon	92308001	92308130	+
GWHAAZE00000004	exon	92308663	92308836	+
GWHAAZE00000004	exon	92308982	92309064	+
GWHAAZE00000004	exon	92310241	92310287	+
GWHAAZE00000004	exon	92310586	92310702	+
GWHAAZE00000004	exon	92311113	92311560	+
GWHAAZE00000004	CDS	92307494	92307742	+
GWHAAZE00000004	CDS	92307825	92307911	+
GWHAAZE00000004	CDS	92308001	92308130	+
GWHAAZE00000004	CDS	92308663	92308836	+
GWHAAZE00000004	CDS	92308982	92309064	+
GWHAAZE00000004	CDS	92310241	92310287	+
GWHAAZE00000004	CDS	92310586	92310702	+
GWHAAZE00000004	CDS	92311113	92311560	+

Transcript Sequence
>GWHTAAZE017147 ATGCTCGGGAATGGAATTATTGGAATCCTTTCCGAGTCCACAAACAAGTGGGAAAGAAGGGTTCCTCTAACCCCTTCACACTGTGCTCGGCTTCTGCATAGTGGCAAGGGTGAAGCGGGAGTTGTGCGCATTATCGTGCAGCCATCAACAAAGCGGATCCATCACGATGCACTCTACGAGGATGTCGGTTGTGAGATTTCTGAGGACTTGTCTGAATGCGGTCTCATCTTGGGTGTCAAACAACCAAAGTTGGAGATGATTCTTCCGGACAGGGCCTATGCCTTTTTCTCTCATACACATAAGGCACAGAAGGAGAACATGCCTTTGTTGGATAAGATTTTAGTTGAGAGGGCATCTTTGTTTGATTACGAGCTTATACTTGGAGATGACGGGAAAAGGTTGCTTGCTTTTGGAAAATTTGCTGGTAGAGCTGGACTGATTGACTTCTTATGTGGATTAGGACAACGTTATCTTAGTCTTGGATATTCAACACCTTTCCTCTCACTGGGTGCATCTTACATGTATTCTTCATTGGCTGCTGCCAAGGCTGCAGTGATTTCTGTGGGTGAAGAGATAGCAACTATGGGACTTCCATCTGGAATCTGTCCTCTAGTTTTTGTTTTCACCGGTTCGGGAAATGTTTCTGTTGGTGCTCAAGAGATATTCAAGCTTCTTCCGCATACTTTTTTGGAACCTAGCAAACTTCCTGAAGTATTTGAGCAGGCGCTTATTATGGTTGATCCAAAGGTGCGAGCTCCTTTACATGCTGGGTCAAGGATCTTACTCAATCTGCACGGGCATCAAAAAGAGTCTTCCAAGTATATGGCTGCGTTGTTAATTGTCAAGACATGGTTGAACATAAAGATCCTATGGAGATCTTCAATAAATCACATTAGTACAACCTGCCACTGCTGCAACTGTGCTGCCTGCCACAACTGCACTTACACCCCACTGTTGCAGCTGTTTCACAGCACTCTAGGCTCTAGCCCATCTTTTGCCAGCCTGTTTGCAGACCAATCAGCTCCTAATATTTGCCTAGATCTCAAGCTTCCTACTCCTTACACTACAGGAGATTTGCCACCTATTAAATTAGAGGAGGAAGAGTACTTGAAAGCTCTTGAATGTTGCAATAACAATCTTATTGGCCGTGTTTCTCTTCCTAAAGGTTCTACTCCCATCAAACCTGTTGACTTACATCACAAACTGTCTAATATTTGGAAATTGAAAAAACCTTGGAGTATATCACCACTGGGTAAAGGACATTACTGTCTCCATTTTTCTGATGAAGAAGATACACATCTAGCTTGGGCTACTTCTTATGCTCAACTCTATCAA

Network for GWHGAAZE017127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05222.16	AlaDh_PNT_N	8	144	3.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14157	AASS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.040
	SRR3591706	second leaf	2.521
	SRR3591707	mature leaf	2.128
	SRR3591708	Shoot apex	3.971
	SRR3591709	Stem	25.322
	SRR3591710	White floral bud	45.344
	SRR3591711	White flower	24.728
	SRR3591712	Green floral bud	21.483
	SRR3591713	Yellow flower	57.248
SRP173429	SRR8316895	Juvenile bud stage	23.754
	SRR8316896	Juvenile bud stage	30.097
	SRR8316897	Juvenile bud stage	12.226
	SRR8316894	Third green stage	10.091
	SRR8316900	Third green stage	34.016
	SRR8316901	Third green stage	28.672
	SRR8316898	Complete white stage	43.934
	SRR8316899	Complete white stage	57.164
	SRR8316903	Complete white stage	87.756
	SRR8316902	Silver flowering stage	18.851
	SRR8316904	Silver flowering stage	32.589
	SRR8316905	Silver flowering stage	14.554
	SRR8316906	Gold flowering stage	41.283
	SRR8316907	Gold flowering stage	27.613
	SRR8316908	Gold flowering stage	26.589
SRP132670	SRR6706286	Control	44.917
	SRR6706287	Light intensity 50%	48.975
	SRR6706288	Light intensity 20%	52.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.344
	CNS0095593	Slightly white alabastrum(diploid) 2	3.247
	CNS0095594	Slightly white alabastrum(diploid) 3	7.067
	CNS0095595	Whole white alabastrum(diploid) 2	4.664
	CNS0095596	Whole white alabastrum(diploid) 3	6.175
	CNS0095597	Whole white alabastrum(diploid) 4	8.284
	CNS0095598	Silvery flower (diploied) 1	8.210
	CNS0095599	Silvery flower (diploied) 2	12.737
	CNS0095600	Silvery flower (diploied) 3	200.361
	CNS0095601	Golden flower (diploid) 1	16.094
	CNS0095602	Golden flower (diploid) 2	188.126
	CNS0095603	Golden flower (diploid) 3	185.749
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.973
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.907
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.916
	CNS0095610	Silvery flower (tetraploid) 1	99.903
	CNS0095611	Silvery flower (tetraploid) 2	230.258
	CNS0095612	Silvery flower (tetraploid) 3	168.960
	CNS0095613	Golden flower (tetraploid) 1	23.297
	CNS0095614	Golden flower (tetraploid) 2	80.288
	CNS0095615	Golden flower (tetraploid) 3	298.481
CRA001975	CRR073297	Stem 1	34.084
	CRR073298	Stem 2	18.387
	CRR073299	Stem 3	23.993
	CRR073300	Leaf 1	33.944
	CRR073301	Leaf 2	18.385
	CRR073302	Leaf 3	26.290
	CRR073303	Juvenile bud 1	20.858
	CRR073304	Juvenile bud 2	43.619
	CRR073305	Juvenile bud 3	42.170
	CRR073306	Third green 1	32.261
	CRR073307	Third green 2	17.219
	CRR073308	Third green 3	28.065
	CRR073309	Second white 1	28.327
	CRR073310	Second white 2	32.218
	CRR073311	Second white 3	52.995
	CRR073312	Silver flowering 1	39.416
	CRR073313	Silver flowering 2	35.125
	CRR073314	Silver flowering 3	50.767
	CRR073315	Gold flowering 1	1.178
	CRR073316	Gold flowering 2	1.181
	CRR073317	Gold flowering 3	0.732
	CRR073318	Tawny withering 1	3.706
	CRR073319	Tawny withering 2	2.137
	CRR073320	Tawny withering 3	5.401