Gene detail

Detail information of GWHGAAZE017131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656073.1	0	PREDICTED: alpha-aminoadipic semialdehyde synthase isoform X4 [Vitis vinifera]
Swissprot	tr\|Q9SMZ4\|AASS_ARATH	0	Saccharopine dehydrogenase
trEMBL	tr\|F6HGZ0\|F6HGZ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51358.1}
TAIR10	AT4G33150.3	8E-149	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	92350352	92356001	+
GWHAAZE00000004	mRNA	92350352	92356001	+
GWHAAZE00000004	exon	92350352	92350378	+
GWHAAZE00000004	exon	92350545	92350610	+
GWHAAZE00000004	exon	92350880	92350997	+
GWHAAZE00000004	exon	92351356	92351485	+
GWHAAZE00000004	exon	92351890	92351969	+
GWHAAZE00000004	exon	92353154	92353312	+
GWHAAZE00000004	exon	92354298	92354535	+
GWHAAZE00000004	exon	92354687	92354795	+
GWHAAZE00000004	exon	92355166	92355333	+
GWHAAZE00000004	exon	92355449	92355518	+
GWHAAZE00000004	exon	92355627	92356001	+
GWHAAZE00000004	CDS	92350352	92350378	+
GWHAAZE00000004	CDS	92350545	92350610	+
GWHAAZE00000004	CDS	92350880	92350997	+
GWHAAZE00000004	CDS	92351356	92351485	+
GWHAAZE00000004	CDS	92351890	92351969	+
GWHAAZE00000004	CDS	92353154	92353312	+
GWHAAZE00000004	CDS	92354298	92354535	+
GWHAAZE00000004	CDS	92354687	92354795	+
GWHAAZE00000004	CDS	92355166	92355333	+
GWHAAZE00000004	CDS	92355449	92355518	+
GWHAAZE00000004	CDS	92355627	92355679	+
GWHAAZE00000004	three_prime_UTR	92355680	92356001	+

Transcript Sequence
>GWHTAAZE017151 ATGGGCAGAAAATTGGCAATTTCTTTGGTTGAGGTTGTCATCAGCTTACTGCCTCCTAGCTGCCACCATACCATAGCAAACGCATGTATTGAGCTTAAGAAACATCTCGTTACTGCTAGCTATGTTGATGATTCCTTGTCAAAGCTAAATGAAGCAGCTAAAAGCGCTGGCATTGCAATTCTTGGTGAGATGGGCTTGGACCCTGGAATAGATCATATGATGGCGATGAAGATGATAAATGAAGCACATATCCAAGGAGGGAGGATCAGATCATTCTCTTCTTACTGTGGGGGTCTCCCATCTCCAGAAGCTGCAAATAACCCATTAGCTTACAAATTCAGCTGGAACCCAGCAGGAGCTATTCGAGCAGGGTGCAATCCGGCTACCTACAAGTATCATGGAGAAATTGTACATGTTGACGGGGACAGTCTTTATGATTCAGCTACAAAACTTCGAATACCCGATCTTCCAGCTTTTGCATTGGAGTGTCTTCCTAATCGCAACTCTTTGGTTTATGGTGACCTATATGGAATAGGTCATGAAGCATCAACCATCTTCCGTGGAACCCTACGTTATGAAGGGTTTGGCGCAATTATGGGGACACTGGCAAGAATTGGTTTCTTCTGTACTGAAATTCATCCAGTTCTTAGTAATGGGAAAACAGCCACTTATAGAACATTCCTATGTGAACTTCTCAAAATCGAAAGCAAGAACATGGCTGGACCCATGATGGGAGAGGATGGCATAAGAAAAAGGATAGTCCAACTCGGAATTTGCAAAGAGGAAGGAGCTGTTGTCAGGACGGCCAAAACTATTATATTTTTGGGATTTCACGAGCCAAAGGAAATACCTATATCCTGTCAAAGTGCATTTGATGTAACTTGCCTCCGCATGGAAGAAAGCTTAGCCTACTCAGGCACAGAGCGGGACATGGTACTTTTGCACCATGAAGTGGAGGTGGATTTCCAAGATGACAACCGGCCGACAAAAAAACATCGGGCGACTTTATTGGAATTCGGGAGGAATGATCAGGATGGGAAAACGACCACTTCCATGGCTCTCACTGTTGGGATTCCTGCAGCCATTGGAGCTCTGCTGTTGCTTGCAAACATGATCAAGACAACTGGTGTGCTAAGGCCAATTGATCCGGAGATTTATGAGCCAGCACTAGAGATTTTACAAGCTTATGGTTTTAATTTGCTGGAGAAGATGGAGTGATTGAATCGGGAAATATACTTTGAAGATTGTTTCTAAAGTACAATAGAAGCAGGCCCAAAATCAGCACCCAAATCAGCTCTGTTTTAAATCACTGAATAATAAGATAGCAGATGATATTGGTGGAGTTATTCTAAGACATGCATATGCGTGCATGCATGTGTGGCAACTCAAGTGATGATAATAAGTTTAAGGATAAAAACAATCTTCTCTTCAGAACAGAATGCTTTTGGGATATAAATTCTCTATAATGTACATGTACTTGGACATTTGTATATTCAGATATTCGTATACAAGTCTATTATATAAAAGGAAAAAAAAAATA

Network for GWHGAAZE017131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03435.19	Sacchrp_dh_NADP	10	60	3.10E-07
PF16653.6	Sacchrp_dh_C	65	397	3.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14157	AASS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.238
	SRR3591706	second leaf	6.933
	SRR3591707	mature leaf	6.529
	SRR3591708	Shoot apex	14.340
	SRR3591709	Stem	78.350
	SRR3591710	White floral bud	96.890
	SRR3591711	White flower	54.263
	SRR3591712	Green floral bud	66.800
	SRR3591713	Yellow flower	112.156
SRP173429	SRR8316895	Juvenile bud stage	31.569
	SRR8316896	Juvenile bud stage	48.451
	SRR8316897	Juvenile bud stage	23.682
	SRR8316894	Third green stage	16.280
	SRR8316900	Third green stage	53.543
	SRR8316901	Third green stage	48.803
	SRR8316898	Complete white stage	42.098
	SRR8316899	Complete white stage	63.499
	SRR8316903	Complete white stage	75.021
	SRR8316902	Silver flowering stage	36.766
	SRR8316904	Silver flowering stage	41.660
	SRR8316905	Silver flowering stage	22.605
	SRR8316906	Gold flowering stage	72.911
	SRR8316907	Gold flowering stage	60.689
	SRR8316908	Gold flowering stage	45.515
SRP132670	SRR6706286	Control	67.841
	SRR6706287	Light intensity 50%	65.385
	SRR6706288	Light intensity 20%	66.087
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.055
	CNS0095593	Slightly white alabastrum(diploid) 2	30.539
	CNS0095594	Slightly white alabastrum(diploid) 3	55.829
	CNS0095595	Whole white alabastrum(diploid) 2	30.977
	CNS0095596	Whole white alabastrum(diploid) 3	28.845
	CNS0095597	Whole white alabastrum(diploid) 4	40.916
	CNS0095598	Silvery flower (diploied) 1	72.135
	CNS0095599	Silvery flower (diploied) 2	119.031
	CNS0095600	Silvery flower (diploied) 3	222.039
	CNS0095601	Golden flower (diploid) 1	120.697
	CNS0095602	Golden flower (diploid) 2	223.638
	CNS0095603	Golden flower (diploid) 3	219.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.441
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.861
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.584
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.901
	CNS0095610	Silvery flower (tetraploid) 1	189.481
	CNS0095611	Silvery flower (tetraploid) 2	273.576
	CNS0095612	Silvery flower (tetraploid) 3	323.834
	CNS0095613	Golden flower (tetraploid) 1	113.715
	CNS0095614	Golden flower (tetraploid) 2	159.630
	CNS0095615	Golden flower (tetraploid) 3	298.926
CRA001975	CRR073297	Stem 1	104.439
	CRR073298	Stem 2	77.087
	CRR073299	Stem 3	71.540
	CRR073300	Leaf 1	86.634
	CRR073301	Leaf 2	75.824
	CRR073302	Leaf 3	53.909
	CRR073303	Juvenile bud 1	61.451
	CRR073304	Juvenile bud 2	78.869
	CRR073305	Juvenile bud 3	86.606
	CRR073306	Third green 1	69.928
	CRR073307	Third green 2	41.841
	CRR073308	Third green 3	58.431
	CRR073309	Second white 1	67.166
	CRR073310	Second white 2	68.502
	CRR073311	Second white 3	76.861
	CRR073312	Silver flowering 1	80.653
	CRR073313	Silver flowering 2	70.261
	CRR073314	Silver flowering 3	112.858
	CRR073315	Gold flowering 1	2.938
	CRR073316	Gold flowering 2	4.108
	CRR073317	Gold flowering 3	2.182
	CRR073318	Tawny withering 1	22.528
	CRR073319	Tawny withering 2	23.932
	CRR073320	Tawny withering 3	21.722