Detail information of GWHGAAZE017143


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009766423.13.6395E-114PREDICTED: F-box/kelch-repeat protein SKIP6 [Nicotiana sylvestris]
Swissprottr|Q9SJ04|SKIP6_ARATH3E-81F-box/kelch-repeat protein SKIP6
trEMBLtr|M1BDJ8|M1BDJ8_SOLTU5E-113Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400042717}
TAIR10AT2G21950.13E-63SKP1 interacting partner 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9308768993088408-
GWHAAZE00000004mRNA9308768993088408-
GWHAAZE00000004exon9308768993088408-
GWHAAZE00000004CDS9308768993088408-
Transcript Sequence

Network for GWHGAAZE017143

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box4483.10E-06
PF01344.26Kelch_1961372.40E-14
PF01344.26Kelch_11421862.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.281
SRR3591706second leaf8.305
SRR3591707mature leaf8.556
SRR3591708Shoot apex11.670
SRR3591709Stem14.799
SRR3591710White floral bud16.160
SRR3591711White flower11.347
SRR3591712Green floral bud13.086
SRR3591713Yellow flower11.504
SRP173429 SRR8316895Juvenile bud stage 3.483
SRR8316896Juvenile bud stage 6.372
SRR8316897Juvenile bud stage 1.771
SRR8316894Third green stage 1.811
SRR8316900Third green stage 6.893
SRR8316901Third green stage 7.031
SRR8316898Complete white stage 2.201
SRR8316899Complete white stage 8.746
SRR8316903Complete white stage 5.485
SRR8316902Silver flowering stage2.276
SRR8316904Silver flowering stage3.894
SRR8316905Silver flowering stage2.620
SRR8316906Gold flowering stage 7.022
SRR8316907Gold flowering stage 7.792
SRR8316908Gold flowering stage 4.735
SRP132670SRR6706286Control14.168
SRR6706287Light intensity 50%14.966
SRR6706288Light intensity 20%12.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.479
CNS0095593Slightly white alabastrum(diploid) 23.487
CNS0095594Slightly white alabastrum(diploid) 34.344
CNS0095595Whole white alabastrum(diploid) 23.923
CNS0095596Whole white alabastrum(diploid) 34.097
CNS0095597Whole white alabastrum(diploid) 46.189
CNS0095598Silvery flower (diploied) 15.093
CNS0095599Silvery flower (diploied) 22.467
CNS0095600Silvery flower (diploied) 37.859
CNS0095601Golden flower (diploid) 14.533
CNS0095602Golden flower (diploid) 29.497
CNS0095603Golden flower (diploid) 37.914
CNS0095604Slightly white alabastrum(tetraploid) 16.515
CNS0095605Slightly white alabastrum(tetraploid) 23.740
CNS0095606Slightly white alabastrum(tetraploid) 37.903
CNS0095607Whole white alabastrum(tetraploid) 16.447
CNS0095608Whole white alabastrum(tetraploid) 23.423
CNS0095609Whole white alabastrum(tetraploid) 37.085
CNS0095610Silvery flower (tetraploid) 110.018
CNS0095611Silvery flower (tetraploid) 28.917
CNS0095612Silvery flower (tetraploid) 39.346
CNS0095613Golden flower (tetraploid) 13.501
CNS0095614Golden flower (tetraploid) 26.448
CNS0095615Golden flower (tetraploid) 38.223
CRA001975CRR073297Stem 17.754
CRR073298Stem 28.426
CRR073299Stem 37.790
CRR073300Leaf 18.170
CRR073301Leaf 27.867
CRR073302Leaf 35.772
CRR073303Juvenile bud 17.442
CRR073304Juvenile bud 25.405
CRR073305Juvenile bud 35.465
CRR073306Third green 13.753
CRR073307Third green 23.102
CRR073308Third green 34.313
CRR073309Second white 13.669
CRR073310Second white 21.562
CRR073311Second white 33.262
CRR073312Silver flowering 11.999
CRR073313Silver flowering 21.264
CRR073314Silver flowering 31.946
CRR073315Gold flowering 11.340
CRR073316Gold flowering 22.954
CRR073317Gold flowering 37.048
CRR073318Tawny withering 14.538
CRR073319Tawny withering 23.224
CRR073320Tawny withering 33.704