Detail information of GWHGAAZE017160


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004296433.19.51684E-44PREDICTED: auxin-responsive protein IAA33-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9FKM7|IAA33_ARATH8E-30Auxin-responsive protein IAA33
trEMBLtr|I3S3X0|I3S3X0_LOTJA2E-41Auxin-induced protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT5G57420.18E-23indole-3-acetic acid inducible 33

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene782142782567+
GWHAAZE00000005mRNA782142782567+
GWHAAZE00000005exon782142782567+
GWHAAZE00000005CDS782142782567+
Transcript Sequence

Network for GWHGAAZE017160

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA591416.70E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.461
SRR3591706second leaf0.108
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.120
SRR3591709Stem0.224
SRR3591710White floral bud1.873
SRR3591711White flower0.549
SRR3591712Green floral bud1.903
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 4.489
SRR8316896Juvenile bud stage 5.006
SRR8316897Juvenile bud stage 4.012
SRR8316894Third green stage 1.021
SRR8316900Third green stage 1.545
SRR8316901Third green stage 4.048
SRR8316898Complete white stage 0.141
SRR8316899Complete white stage 3.488
SRR8316903Complete white stage 0.717
SRR8316902Silver flowering stage0.038
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.040
SRR8316906Gold flowering stage 0.586
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 1.992
SRP132670SRR6706286Control4.782
SRR6706287Light intensity 50%4.586
SRR6706288Light intensity 20%2.849
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.925
CNS0095593Slightly white alabastrum(diploid) 23.320
CNS0095594Slightly white alabastrum(diploid) 31.476
CNS0095595Whole white alabastrum(diploid) 21.551
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 41.680
CNS0095598Silvery flower (diploied) 13.883
CNS0095599Silvery flower (diploied) 22.471
CNS0095600Silvery flower (diploied) 30.412
CNS0095601Golden flower (diploid) 12.551
CNS0095602Golden flower (diploid) 21.874
CNS0095603Golden flower (diploid) 31.519
CNS0095604Slightly white alabastrum(tetraploid) 14.572
CNS0095605Slightly white alabastrum(tetraploid) 23.691
CNS0095606Slightly white alabastrum(tetraploid) 317.000
CNS0095607Whole white alabastrum(tetraploid) 11.870
CNS0095608Whole white alabastrum(tetraploid) 21.996
CNS0095609Whole white alabastrum(tetraploid) 30.445
CNS0095610Silvery flower (tetraploid) 10.052
CNS0095611Silvery flower (tetraploid) 21.196
CNS0095612Silvery flower (tetraploid) 30.735
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 18.968
CRR073298Stem 211.058
CRR073299Stem 311.173
CRR073300Leaf 14.189
CRR073301Leaf 27.531
CRR073302Leaf 34.203
CRR073303Juvenile bud 12.756
CRR073304Juvenile bud 21.002
CRR073305Juvenile bud 33.491
CRR073306Third green 10.210
CRR073307Third green 20.375
CRR073308Third green 30.298
CRR073309Second white 10.908
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.060
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.720
CRR073315Gold flowering 10.066
CRR073316Gold flowering 20.073
CRR073317Gold flowering 30.947
CRR073318Tawny withering 15.221
CRR073319Tawny withering 21.382
CRR073320Tawny withering 30.232