Detail information of GWHGAAZE017180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.11.8219E-176NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH4E-58Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC7E-177NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT4G26090.13E-55NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene15618881565161+
GWHAAZE00000005mRNA15618881565161+
GWHAAZE00000005exon15618881561908+
GWHAAZE00000005exon15620121565161+
GWHAAZE00000005CDS15618881561908+
GWHAAZE00000005CDS15620121565161+
Transcript Sequence

Network for GWHGAAZE017180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1673994.40E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.868
SRR3591706second leaf1.246
SRR3591707mature leaf2.497
SRR3591708Shoot apex2.589
SRR3591709Stem4.891
SRR3591710White floral bud1.962
SRR3591711White flower3.425
SRR3591712Green floral bud1.101
SRR3591713Yellow flower0.384
SRP173429 SRR8316895Juvenile bud stage 0.474
SRR8316896Juvenile bud stage 0.592
SRR8316897Juvenile bud stage 1.377
SRR8316894Third green stage 0.171
SRR8316900Third green stage 0.121
SRR8316901Third green stage 0.151
SRR8316898Complete white stage 0.057
SRR8316899Complete white stage 1.212
SRR8316903Complete white stage 0.497
SRR8316902Silver flowering stage0.153
SRR8316904Silver flowering stage0.304
SRR8316905Silver flowering stage0.079
SRR8316906Gold flowering stage 0.261
SRR8316907Gold flowering stage 0.161
SRR8316908Gold flowering stage 1.172
SRP132670SRR6706286Control0.334
SRR6706287Light intensity 50%0.264
SRR6706288Light intensity 20%0.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.581
CNS0095593Slightly white alabastrum(diploid) 20.971
CNS0095594Slightly white alabastrum(diploid) 30.462
CNS0095595Whole white alabastrum(diploid) 20.396
CNS0095596Whole white alabastrum(diploid) 30.235
CNS0095597Whole white alabastrum(diploid) 40.276
CNS0095598Silvery flower (diploied) 11.425
CNS0095599Silvery flower (diploied) 21.534
CNS0095600Silvery flower (diploied) 30.682
CNS0095601Golden flower (diploid) 12.009
CNS0095602Golden flower (diploid) 21.583
CNS0095603Golden flower (diploid) 31.365
CNS0095604Slightly white alabastrum(tetraploid) 11.267
CNS0095605Slightly white alabastrum(tetraploid) 21.331
CNS0095606Slightly white alabastrum(tetraploid) 33.796
CNS0095607Whole white alabastrum(tetraploid) 11.351
CNS0095608Whole white alabastrum(tetraploid) 20.520
CNS0095609Whole white alabastrum(tetraploid) 30.530
CNS0095610Silvery flower (tetraploid) 10.868
CNS0095611Silvery flower (tetraploid) 21.912
CNS0095612Silvery flower (tetraploid) 31.711
CNS0095613Golden flower (tetraploid) 10.747
CNS0095614Golden flower (tetraploid) 21.192
CNS0095615Golden flower (tetraploid) 30.504
CRA001975CRR073297Stem 10.559
CRR073298Stem 20.433
CRR073299Stem 30.324
CRR073300Leaf 10.473
CRR073301Leaf 20.191
CRR073302Leaf 30.096
CRR073303Juvenile bud 10.140
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.346
CRR073306Third green 10.046
CRR073307Third green 20.079
CRR073308Third green 30.321
CRR073309Second white 10.192
CRR073310Second white 20.448
CRR073311Second white 30.087
CRR073312Silver flowering 10.019
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.188
CRR073315Gold flowering 12.306
CRR073316Gold flowering 24.655
CRR073317Gold flowering 31.134
CRR073318Tawny withering 14.371
CRR073319Tawny withering 25.606
CRR073320Tawny withering 34.480