Gene detail

Detail information of GWHGAAZE017199

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655295.1	0	PREDICTED: kelch repeat-containing protein At3g27220 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LK31\|Y3272_ARATH	0	Kelch repeat-containing protein At3g27220
trEMBL	tr\|D7SS26\|D7SS26_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18458.3}
TAIR10	AT1G51540.1	2E-170	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2349325	2359373	+
GWHAAZE00000005	mRNA	2349325	2359373	+
GWHAAZE00000005	exon	2349325	2349516	+
GWHAAZE00000005	exon	2350077	2350306	+
GWHAAZE00000005	exon	2352615	2352785	+
GWHAAZE00000005	exon	2357833	2357938	+
GWHAAZE00000005	exon	2358768	2358974	+
GWHAAZE00000005	exon	2359203	2359373	+
GWHAAZE00000005	CDS	2349325	2349516	+
GWHAAZE00000005	CDS	2350077	2350306	+
GWHAAZE00000005	CDS	2352615	2352785	+
GWHAAZE00000005	CDS	2357833	2357938	+
GWHAAZE00000005	CDS	2358768	2358974	+
GWHAAZE00000005	CDS	2359203	2359373	+

Transcript Sequence
>GWHTAAZE017219 CGCGGTGGTGATAAAGATAAAAAGGATACAACTGTATTTGGGAGAAATTTATCAGCTACTTTTGCTGATTTACCTGGCCGACAACTGAAATGGGAAAAGATGAAACCAGCACCTGTCCCTCGTCTTGATGGAGCTGCAATACAGATCAAGAATCTTCTCTTTGTCTTTGCTGGATACGGAACCATTGATTATGTTCACTCTCATGTTGATATATACAATTTTACGGATAATACATGGGGAGAAAGGTTTGATATGCCAAAAGAAATGGCACATTCTCATCTGGGAATGGCAACGGATGGAAGATACATTTATGTTGTCACCGGACAATATGGTCCACAGTGTAGAGGACCAACAGCTCATACATTTGTGTTGGATACAGAGACAAAGCAATGGCGAGACATGCCTCCATTACCTGTCCCTAGGTATGCACCAGCAACCCAACTTTGGAGAGGTAGACTCCATGTGATGGGTGGCAGCAAAGAAAACCGACATACTCCGGGATTAGAGCATTGGAGTCTTGCCGTGAAGGATGGAAAAGCTTTAGAGAAGGAATGGCAGACTGAAATACCCATACCCCGTGGTGGCCCTCATCGCGCTTGTGTTGTGGTTGATGATCGATTATATGTTATTGGTGGTCAAGAAGGTGATTTTATGGCTAAACCTGGTTCACCTATTTTCAAATGCTCCCGCAGAAATGAGGTTGTGTATGAAGATGTATACATGCTAGATGGGGAGATGAAGTGGAAAGTGTTGCCTCCAATGCCAAAGCCTGATTCCCATATAGAGTTTGCTTGGGTTGTTGTCAACAATTCTATAGTTATTGTTGGAGGCACCACAGATAAACACCCCTTAACCAAGAAGATGACACTGGTTGGAGAAATCTTGCAGTTTCAGTTAGATGCGCTGAAATGGTCGGTGGTGGGGAAATTGCCATACAGGGTGAAGACGACACTGGTTGGGTTCTGGGACGGATGGCTGTACTTCACATCGGGACAGCGGGACAAAGGACCCGATGATCCAGCACCCAGGAAGGTCATTGGAGAGATGTGGAGAACCAAATTGAGTTTATTATTATGA

Network for GWHGAAZE017199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0018

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13418.7	Kelch_4	40	86	3.30E-08
PF01344.26	Kelch_1	92	138	1.70E-06
PF01344.26	Kelch_1	197	255	0.00027

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.447
	SRR3591706	second leaf	17.204
	SRR3591707	mature leaf	11.279
	SRR3591708	Shoot apex	24.276
	SRR3591709	Stem	28.707
	SRR3591710	White floral bud	22.438
	SRR3591711	White flower	26.471
	SRR3591712	Green floral bud	32.724
	SRR3591713	Yellow flower	26.684
SRP173429	SRR8316895	Juvenile bud stage	20.538
	SRR8316896	Juvenile bud stage	30.685
	SRR8316897	Juvenile bud stage	14.936
	SRR8316894	Third green stage	11.315
	SRR8316900	Third green stage	39.499
	SRR8316901	Third green stage	34.021
	SRR8316898	Complete white stage	15.949
	SRR8316899	Complete white stage	39.138
	SRR8316903	Complete white stage	23.734
	SRR8316902	Silver flowering stage	13.608
	SRR8316904	Silver flowering stage	18.490
	SRR8316905	Silver flowering stage	10.369
	SRR8316906	Gold flowering stage	27.225
	SRR8316907	Gold flowering stage	24.993
	SRR8316908	Gold flowering stage	27.059
SRP132670	SRR6706286	Control	26.244
	SRR6706287	Light intensity 50%	25.756
	SRR6706288	Light intensity 20%	28.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.687
	CNS0095593	Slightly white alabastrum(diploid) 2	29.875
	CNS0095594	Slightly white alabastrum(diploid) 3	30.272
	CNS0095595	Whole white alabastrum(diploid) 2	36.081
	CNS0095596	Whole white alabastrum(diploid) 3	34.518
	CNS0095597	Whole white alabastrum(diploid) 4	34.899
	CNS0095598	Silvery flower (diploied) 1	18.881
	CNS0095599	Silvery flower (diploied) 2	21.147
	CNS0095600	Silvery flower (diploied) 3	24.264
	CNS0095601	Golden flower (diploid) 1	16.491
	CNS0095602	Golden flower (diploid) 2	22.585
	CNS0095603	Golden flower (diploid) 3	18.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.976
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.483
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.270
	CNS0095610	Silvery flower (tetraploid) 1	28.978
	CNS0095611	Silvery flower (tetraploid) 2	21.410
	CNS0095612	Silvery flower (tetraploid) 3	29.135
	CNS0095613	Golden flower (tetraploid) 1	22.371
	CNS0095614	Golden flower (tetraploid) 2	29.765
	CNS0095615	Golden flower (tetraploid) 3	20.526
CRA001975	CRR073297	Stem 1	23.613
	CRR073298	Stem 2	25.654
	CRR073299	Stem 3	23.058
	CRR073300	Leaf 1	34.226
	CRR073301	Leaf 2	30.668
	CRR073302	Leaf 3	23.100
	CRR073303	Juvenile bud 1	29.730
	CRR073304	Juvenile bud 2	22.553
	CRR073305	Juvenile bud 3	27.339
	CRR073306	Third green 1	15.868
	CRR073307	Third green 2	14.424
	CRR073308	Third green 3	12.227
	CRR073309	Second white 1	13.738
	CRR073310	Second white 2	19.054
	CRR073311	Second white 3	14.666
	CRR073312	Silver flowering 1	14.161
	CRR073313	Silver flowering 2	11.734
	CRR073314	Silver flowering 3	10.561
	CRR073315	Gold flowering 1	9.134
	CRR073316	Gold flowering 2	15.025
	CRR073317	Gold flowering 3	10.170
	CRR073318	Tawny withering 1	23.266
	CRR073319	Tawny withering 2	20.415
	CRR073320	Tawny withering 3	24.817