Gene detail

Detail information of GWHGAAZE017207

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011072741.1	PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q8H116\|MNS2_ARATH	Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2
trEMBL	tr\|D7SS40\|D7SS40_VITVI	alpha-1,2-Mannosidase {ECO:0000256\|RuleBase:RU361193}
TAIR10	AT3G21160.1	alpha-mannosidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2445886	2460011	+
GWHAAZE00000005	mRNA	2445886	2460011	+
GWHAAZE00000005	exon	2445886	2445933	+
GWHAAZE00000005	exon	2446024	2446102	+
GWHAAZE00000005	exon	2446809	2446888	+
GWHAAZE00000005	exon	2447555	2447667	+
GWHAAZE00000005	exon	2448887	2448952	+
GWHAAZE00000005	exon	2449142	2449313	+
GWHAAZE00000005	exon	2449732	2449821	+
GWHAAZE00000005	exon	2450066	2450190	+
GWHAAZE00000005	exon	2450350	2450415	+
GWHAAZE00000005	exon	2451132	2451240	+
GWHAAZE00000005	exon	2451337	2451435	+
GWHAAZE00000005	exon	2458816	2458896	+
GWHAAZE00000005	exon	2458973	2459143	+
GWHAAZE00000005	exon	2459462	2460011	+
GWHAAZE00000005	CDS	2445886	2445933	+
GWHAAZE00000005	CDS	2446024	2446102	+
GWHAAZE00000005	CDS	2446809	2446888	+
GWHAAZE00000005	CDS	2447555	2447667	+
GWHAAZE00000005	CDS	2448887	2448952	+
GWHAAZE00000005	CDS	2449142	2449313	+
GWHAAZE00000005	CDS	2449732	2449821	+
GWHAAZE00000005	CDS	2450066	2450190	+
GWHAAZE00000005	CDS	2450350	2450415	+
GWHAAZE00000005	CDS	2451132	2451240	+
GWHAAZE00000005	CDS	2451337	2451435	+
GWHAAZE00000005	CDS	2458816	2458896	+
GWHAAZE00000005	CDS	2458973	2459143	+
GWHAAZE00000005	CDS	2459462	2459710	+
GWHAAZE00000005	three_prime_UTR	2459711	2460011	+

Transcript Sequence
>GWHTAAZE017227 GTGGAGGTGTCAAAACTGAATGAAGAAGTGAAGCGTTTACAAGATATGGTTTCTTTCCATGTTTATAGTGCCTTATCTCATATTAGATATTTTATAAGGCTTTTGGTCAGAGCCTTTTCTATTCTAGCGAAGAGAAAAGTTAAAGATGCTATGATCCATGCATGGACCTCATATGAGAAATATGCATGGGGACGCGATGAGCTTCAGCCACAGTCAAAGAATGGTGTTGATAGCTTTGGCGGTCTTGGAGCAACTCTGATAGACTCACTTGATACGTTATATATAATGGGTCTAGAGGAGCAATTTCAAAGAGCTAGAGAGTGGGTTGCTAACTCTTTGGATTTCAACAAGAACTATGATGCTAGTGTTTTTGAGACAACAATAAGAGTTGTGGGTGGACTTCTTAGTACGTATGATCTCTCCGGGGACAAAGTTTTCATTGAAAAGGCCACAGATATTGCTGATAGACTGTTGCCTGCATGGGATACACGTTCTGGCATTCCCTATAACATTATTAATTTGGCATATGGGAATGCTCATAATCCTAGTTGGACTGGGGGTGATAGTATCTTGGCAGATTCTGGTACAGAACAGATGGAATTTATTGCTCTTTCTCAAAGGACAGGGGATCCAAAGTATCAGCAGAAGGCTGAGAATGTTATTGCAGAGCTTAGTAAAATCTTTCCCACTGATGGTTTGTTTCCCATCTATATTAATCCTCATAAAGGAACAACATCATATTCAACCATCACTTTTGGCGCCATGGGGGACAGTTTTTACGAGTATTTACTCAAAGTTTGGATACAAGGGAACAAAACTTCTGCCGTAAAGCACTACAGAGAAATGTGGGAGACATCAATGAAAGGCCTGTTAAGCTTGGTTAGGAGAACTACTCCATCATCTTTTGCATATATTAGTGAGAAGATGGGAAGTTCTCTGATTGACAAGATGGACGAGTTAGCATGCTTTGCACCAGGAATGTTAGCATTAGGATCATCTGGTTATGATACTGATGAATCTCAGAAATTCCTATCACTGGCTGAAGAGCTTGCATGGACATGCTATAACTTCTACCAGTCAACACCAACAAAATTGGCTGGGGAGAACTATTTCTTTAATGCAGGCCAGGACATGAGTGTGGGCACATCGTGGAACATTTTGAGGCCAGAGACAGTTGAATCACTCTTTTACCTCTGGCGTTTAACCGGTAACAAGACGTACCAAGAGTGGGGTTGGAACATATTTCAAGCATTTGAAAAGAACTCCCGCATAGAGTCGGGATATGTTGGATTGAAAGATGTAAACACAGGGGTCCAAGACAATATGATGCAGAGCTTTTTTCTTGCGGAAACACTCAAGTATCTGTATCTTCTTTTCTCACCCACTTCGGTTATCCCGTTGGATGAGTGGGTTTTCAACACAGAAGCCCACCCTATAAGAATTGTCACCCAGCATGGCGAGGGCGATAATTCTGGGGTATTGGAGAGACAGCACAGACCATTGGGTAGGGCTCGTGCTAGGAAAGAAGGTCGATTCGGTGTCGATTGAGATTTTATTGGTAGGGTTCCGAAATTTTTTGGCAAAATATATGGAGAGATAAGGGATCCATTCGGATAGTTGTTGGGGCGTTGGTGCTGTTGACAGTTTCTGTTAAAAGAAAATAATGAGAATGGGTTCAGCTCAAGAGAGTCCCCACCCGCTTACTCTGGGATAATTTTGCAATATGTATTTTTGTAGTGTAGTTTGTGTGCCACGATGCACTGGATAGTGGGAAGCGATGGGTGTGTAACATATAGAGATACAACATAGTTTATTCCTTTACAATTTGATATCCTCCCCAGCCCCCCTC

Network for GWHGAAZE017207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01532.21	Glyco_hydro_47	50	481	4.20E-154

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01230	MAN1A_C, MNS1_2	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0004571	molecular_function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.184
	SRR3591706	second leaf	10.020
	SRR3591707	mature leaf	5.579
	SRR3591708	Shoot apex	15.729
	SRR3591709	Stem	15.906
	SRR3591710	White floral bud	17.655
	SRR3591711	White flower	18.308
	SRR3591712	Green floral bud	28.181
	SRR3591713	Yellow flower	14.937
SRP173429	SRR8316895	Juvenile bud stage	13.529
	SRR8316896	Juvenile bud stage	22.575
	SRR8316897	Juvenile bud stage	12.086
	SRR8316894	Third green stage	9.698
	SRR8316900	Third green stage	29.841
	SRR8316901	Third green stage	27.559
	SRR8316898	Complete white stage	7.460
	SRR8316899	Complete white stage	22.595
	SRR8316903	Complete white stage	12.369
	SRR8316902	Silver flowering stage	8.213
	SRR8316904	Silver flowering stage	8.723
	SRR8316905	Silver flowering stage	4.124
	SRR8316906	Gold flowering stage	11.959
	SRR8316907	Gold flowering stage	11.650
	SRR8316908	Gold flowering stage	15.378
SRP132670	SRR6706286	Control	19.844
	SRR6706287	Light intensity 50%	18.167
	SRR6706288	Light intensity 20%	18.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.979
	CNS0095593	Slightly white alabastrum(diploid) 2	18.799
	CNS0095594	Slightly white alabastrum(diploid) 3	22.538
	CNS0095595	Whole white alabastrum(diploid) 2	21.540
	CNS0095596	Whole white alabastrum(diploid) 3	26.402
	CNS0095597	Whole white alabastrum(diploid) 4	20.111
	CNS0095598	Silvery flower (diploied) 1	9.966
	CNS0095599	Silvery flower (diploied) 2	7.944
	CNS0095600	Silvery flower (diploied) 3	11.903
	CNS0095601	Golden flower (diploid) 1	7.979
	CNS0095602	Golden flower (diploid) 2	11.553
	CNS0095603	Golden flower (diploid) 3	11.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.475
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.437
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.095
	CNS0095610	Silvery flower (tetraploid) 1	12.407
	CNS0095611	Silvery flower (tetraploid) 2	11.824
	CNS0095612	Silvery flower (tetraploid) 3	12.346
	CNS0095613	Golden flower (tetraploid) 1	6.411
	CNS0095614	Golden flower (tetraploid) 2	10.743
	CNS0095615	Golden flower (tetraploid) 3	9.432
CRA001975	CRR073297	Stem 1	14.517
	CRR073298	Stem 2	12.931
	CRR073299	Stem 3	11.178
	CRR073300	Leaf 1	16.000
	CRR073301	Leaf 2	14.359
	CRR073302	Leaf 3	11.968
	CRR073303	Juvenile bud 1	13.277
	CRR073304	Juvenile bud 2	9.604
	CRR073305	Juvenile bud 3	15.739
	CRR073306	Third green 1	6.427
	CRR073307	Third green 2	4.276
	CRR073308	Third green 3	5.825
	CRR073309	Second white 1	5.276
	CRR073310	Second white 2	4.778
	CRR073311	Second white 3	4.453
	CRR073312	Silver flowering 1	4.498
	CRR073313	Silver flowering 2	6.771
	CRR073314	Silver flowering 3	4.347
	CRR073315	Gold flowering 1	3.120
	CRR073316	Gold flowering 2	4.721
	CRR073317	Gold flowering 3	2.489
	CRR073318	Tawny withering 1	9.688
	CRR073319	Tawny withering 2	10.777
	CRR073320	Tawny withering 3	12.685