Gene detail

Detail information of GWHGAAZE017209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007223754.1	5.0548E-154	hypothetical protein PRUPE_ppa010542mg [Prunus persica]
Swissprot	tr\|Q9LHP1\|RL74_ARATH	3E-147	60S ribosomal protein L7-4
trEMBL	tr\|M5XTN9\|M5XTN9_PRUPE	2E-154	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24953.1}
TAIR10	AT3G13580.3	3E-109	Ribosomal protein L30/L7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2469225	2471010	-
GWHAAZE00000005	mRNA	2469225	2471010	-
GWHAAZE00000005	exon	2469225	2469440	-
GWHAAZE00000005	exon	2469534	2469636	-
GWHAAZE00000005	exon	2469717	2469796	-
GWHAAZE00000005	exon	2470449	2470506	-
GWHAAZE00000005	exon	2470602	2470699	-
GWHAAZE00000005	exon	2470789	2471010	-
GWHAAZE00000005	CDS	2470789	2471010	-
GWHAAZE00000005	CDS	2470602	2470699	-
GWHAAZE00000005	CDS	2470449	2470506	-
GWHAAZE00000005	CDS	2469717	2469796	-
GWHAAZE00000005	CDS	2469534	2469636	-
GWHAAZE00000005	CDS	2469225	2469440	-

Transcript Sequence
>GWHTAAZE017229 ATGACTGAGGAGCAAGTCAAGGGAGGCCCTGTGATCCCACACTCAGTCCTGAAGAAACAGGAGAGGAATGAGGAATGGGCTTTGGCTAAGAAGCAAGGGCTTGAAGCTCTAAAGAAGAAGAACGCTGAAAACCGCAAGTTGATATACAACCGTGCTAAGCAATACTCTCAGGAGTACGAGGAGCAGGTGTCTATCCTCCTCTATGCTTTTCATTTTCGTTTGCAAATAGAGCTTGTTCAGTTGAAGCGTGAGGCAAGGTTGAAAGGTGGATTTTATGTCAGCCCTGAAGCTAAGCTTTTGTTCATTATTCGGATTCGCGGTATAAATGCTATTGATCCCAAGACAAAGAAGATTTTGCAACTCTTACGATTGCGACAGATTTTCAATGGCGTCTTTCTAAAAGTCAACAAAGCAACAATTAATATGCTTCACAGGGTTGAGCCTTACGTGACTTTTGGGTACCCCAATTTGAAGAGCGTGAAGGAATTGATTTACAAGAGAGGCTATGGCAAGCTGAACAAGAGTAGGATTGCTTTGACAGACAATTCAATCATTGAACAGGCTCTAGGAAAACATGGTATTATCTGCATAGAAGATCTTGTTCACGAGATCTTAACAGTGGGTCCTCATTTTAAGGAAGCTAACAACTTCCTCTGGCCCTTCAAGCTGAAAGCACCATTGGGTGGCCTGAAGAAGAAGAGGAACCACTACGTGGAAGGTGGAGATGCTGGAAACCGTGAAGATTACATTAACGATCTCATCAGGAGAATGAACTAG

Network for GWHGAAZE017209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08079.13	Ribosomal_L30_N	13	62	2.20E-11
PF00327.21	Ribosomal_L30	100	150	2.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02937	RP-L7e, RPL7	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022625	cellular_component	cytosolic large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	228.695
	SRR3591706	second leaf	80.893
	SRR3591707	mature leaf	30.835
	SRR3591708	Shoot apex	205.905
	SRR3591709	Stem	88.074
	SRR3591710	White floral bud	67.279
	SRR3591711	White flower	90.453
	SRR3591712	Green floral bud	192.294
	SRR3591713	Yellow flower	33.989
SRP173429	SRR8316895	Juvenile bud stage	93.279
	SRR8316896	Juvenile bud stage	146.507
	SRR8316897	Juvenile bud stage	79.448
	SRR8316894	Third green stage	62.282
	SRR8316900	Third green stage	200.557
	SRR8316901	Third green stage	168.492
	SRR8316898	Complete white stage	20.668
	SRR8316899	Complete white stage	143.057
	SRR8316903	Complete white stage	32.296
	SRR8316902	Silver flowering stage	19.041
	SRR8316904	Silver flowering stage	22.457
	SRR8316905	Silver flowering stage	9.765
	SRR8316906	Gold flowering stage	26.708
	SRR8316907	Gold flowering stage	29.118
	SRR8316908	Gold flowering stage	37.129
SRP132670	SRR6706286	Control	99.202
	SRR6706287	Light intensity 50%	106.580
	SRR6706288	Light intensity 20%	116.561
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	168.545
	CNS0095593	Slightly white alabastrum(diploid) 2	195.409
	CNS0095594	Slightly white alabastrum(diploid) 3	158.109
	CNS0095595	Whole white alabastrum(diploid) 2	136.492
	CNS0095596	Whole white alabastrum(diploid) 3	186.444
	CNS0095597	Whole white alabastrum(diploid) 4	119.059
	CNS0095598	Silvery flower (diploied) 1	58.292
	CNS0095599	Silvery flower (diploied) 2	53.954
	CNS0095600	Silvery flower (diploied) 3	40.714
	CNS0095601	Golden flower (diploid) 1	40.098
	CNS0095602	Golden flower (diploid) 2	32.510
	CNS0095603	Golden flower (diploid) 3	29.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	141.708
	CNS0095605	Slightly white alabastrum(tetraploid) 2	134.293
	CNS0095606	Slightly white alabastrum(tetraploid) 3	175.808
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.649
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	148.227
	CNS0095610	Silvery flower (tetraploid) 1	42.452
	CNS0095611	Silvery flower (tetraploid) 2	37.264
	CNS0095612	Silvery flower (tetraploid) 3	32.981
	CNS0095613	Golden flower (tetraploid) 1	21.670
	CNS0095614	Golden flower (tetraploid) 2	34.438
	CNS0095615	Golden flower (tetraploid) 3	18.823
CRA001975	CRR073297	Stem 1	112.689
	CRR073298	Stem 2	119.567
	CRR073299	Stem 3	115.477
	CRR073300	Leaf 1	108.664
	CRR073301	Leaf 2	102.879
	CRR073302	Leaf 3	143.197
	CRR073303	Juvenile bud 1	140.444
	CRR073304	Juvenile bud 2	76.842
	CRR073305	Juvenile bud 3	110.139
	CRR073306	Third green 1	12.480
	CRR073307	Third green 2	11.530
	CRR073308	Third green 3	12.413
	CRR073309	Second white 1	21.088
	CRR073310	Second white 2	14.632
	CRR073311	Second white 3	9.727
	CRR073312	Silver flowering 1	13.914
	CRR073313	Silver flowering 2	16.216
	CRR073314	Silver flowering 3	14.206
	CRR073315	Gold flowering 1	28.246
	CRR073316	Gold flowering 2	37.995
	CRR073317	Gold flowering 3	25.107
	CRR073318	Tawny withering 1	93.920
	CRR073319	Tawny withering 2	71.437
	CRR073320	Tawny withering 3	104.346