Detail information of GWHGAAZE017215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006342872.10PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Solanum tuberosum]
Swissprottr|O04130|SERA2_ARATH0D-3-phosphoglycerate dehydrogenase 2, chloroplastic (Precursor)
trEMBLtr|M1AIT2|M1AIT2_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023675}
TAIR10AT1G17745.17E-170D-3-phosphoglycerate dehydrogenase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene25696222593225-
GWHAAZE00000005mRNA25696222593225-
GWHAAZE00000005exon25931442593225-
GWHAAZE00000005exon25923942593060-
GWHAAZE00000005exon25863902586575-
GWHAAZE00000005exon25861452586211-
GWHAAZE00000005exon25739482574296-
GWHAAZE00000005exon25712212571564-
GWHAAZE00000005exon25703842570479-
GWHAAZE00000005exon25696222570293-
GWHAAZE00000005CDS25931442593225-
GWHAAZE00000005CDS25923942593060-
GWHAAZE00000005CDS25863902586575-
GWHAAZE00000005CDS25861452586211-
GWHAAZE00000005CDS25739482574296-
GWHAAZE00000005CDS25712212571564-
GWHAAZE00000005CDS25703842570479-
GWHAAZE00000005CDS25696222570293-
Transcript Sequence

Network for GWHGAAZE017215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00732.20GMC_oxred_N472433.30E-11
PF00389.312-Hacid_dh3375901.90E-30
PF02826.202-Hacid_dh_C4315666.70E-44
PF01842.26ACT7498045.20E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00058serA, PHGDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660molecular_functionflavin adenine dinucleotide binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf187.576
SRR3591706second leaf64.478
SRR3591707mature leaf20.678
SRR3591708Shoot apex87.317
SRR3591709Stem96.256
SRR3591710White floral bud88.433
SRR3591711White flower47.086
SRR3591712Green floral bud145.720
SRR3591713Yellow flower17.674
SRP173429 SRR8316895Juvenile bud stage 56.642
SRR8316896Juvenile bud stage 68.548
SRR8316897Juvenile bud stage 27.079
SRR8316894Third green stage 28.071
SRR8316900Third green stage 98.165
SRR8316901Third green stage 98.381
SRR8316898Complete white stage 19.166
SRR8316899Complete white stage 76.153
SRR8316903Complete white stage 37.766
SRR8316902Silver flowering stage12.555
SRR8316904Silver flowering stage25.309
SRR8316905Silver flowering stage13.450
SRR8316906Gold flowering stage 34.096
SRR8316907Gold flowering stage 25.484
SRR8316908Gold flowering stage 41.127
SRP132670SRR6706286Control79.682
SRR6706287Light intensity 50%86.802
SRR6706288Light intensity 20%91.081
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.750
CNS0095593Slightly white alabastrum(diploid) 261.901
CNS0095594Slightly white alabastrum(diploid) 348.386
CNS0095595Whole white alabastrum(diploid) 263.616
CNS0095596Whole white alabastrum(diploid) 367.873
CNS0095597Whole white alabastrum(diploid) 467.986
CNS0095598Silvery flower (diploied) 167.362
CNS0095599Silvery flower (diploied) 267.553
CNS0095600Silvery flower (diploied) 338.940
CNS0095601Golden flower (diploid) 147.406
CNS0095602Golden flower (diploid) 246.128
CNS0095603Golden flower (diploid) 343.637
CNS0095604Slightly white alabastrum(tetraploid) 182.469
CNS0095605Slightly white alabastrum(tetraploid) 267.074
CNS0095606Slightly white alabastrum(tetraploid) 3183.730
CNS0095607Whole white alabastrum(tetraploid) 174.947
CNS0095608Whole white alabastrum(tetraploid) 274.563
CNS0095609Whole white alabastrum(tetraploid) 3141.537
CNS0095610Silvery flower (tetraploid) 123.628
CNS0095611Silvery flower (tetraploid) 223.725
CNS0095612Silvery flower (tetraploid) 330.740
CNS0095613Golden flower (tetraploid) 111.693
CNS0095614Golden flower (tetraploid) 227.444
CNS0095615Golden flower (tetraploid) 311.930
CRA001975CRR073297Stem 1161.982
CRR073298Stem 2161.716
CRR073299Stem 3173.025
CRR073300Leaf 1243.293
CRR073301Leaf 2199.941
CRR073302Leaf 3193.503
CRR073303Juvenile bud 1216.433
CRR073304Juvenile bud 2159.267
CRR073305Juvenile bud 3204.344
CRR073306Third green 178.733
CRR073307Third green 290.473
CRR073308Third green 368.434
CRR073309Second white 152.734
CRR073310Second white 224.276
CRR073311Second white 320.131
CRR073312Silver flowering 141.946
CRR073313Silver flowering 264.975
CRR073314Silver flowering 353.269
CRR073315Gold flowering 119.566
CRR073316Gold flowering 223.907
CRR073317Gold flowering 354.145
CRR073318Tawny withering 1176.826
CRR073319Tawny withering 299.966
CRR073320Tawny withering 3142.012