Detail information of GWHGAAZE017224


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009796491.10PREDICTED: uncharacterized protein LOC104243063 [Nicotiana sylvestris]
trEMBLtr|M1AIR5|M1AIR5_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023652}
TAIR10AT5G50420.10O-fucosyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene28067902810346-
GWHAAZE00000005mRNA28067902810346-
GWHAAZE00000005exon28091272810346-
GWHAAZE00000005exon28087612809010-
GWHAAZE00000005exon28067902807180-
GWHAAZE00000005CDS28091272810346-
GWHAAZE00000005CDS28087612809010-
GWHAAZE00000005CDS28070042807180-
GWHAAZE00000005three_prime_UTR28067902807003-
Transcript Sequence

Network for GWHGAAZE017224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10250.10O-FucT2205231.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03691POFUT Other types of O-glycan biosynthesis map00514

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.095
SRR3591706second leaf43.852
SRR3591707mature leaf14.135
SRR3591708Shoot apex36.226
SRR3591709Stem130.954
SRR3591710White floral bud46.477
SRR3591711White flower16.100
SRR3591712Green floral bud65.210
SRR3591713Yellow flower8.604
SRP173429 SRR8316895Juvenile bud stage 32.031
SRR8316896Juvenile bud stage 36.968
SRR8316897Juvenile bud stage 17.901
SRR8316894Third green stage 17.534
SRR8316900Third green stage 49.288
SRR8316901Third green stage 46.934
SRR8316898Complete white stage 13.091
SRR8316899Complete white stage 33.678
SRR8316903Complete white stage 22.557
SRR8316902Silver flowering stage4.095
SRR8316904Silver flowering stage9.196
SRR8316905Silver flowering stage3.544
SRR8316906Gold flowering stage 6.011
SRR8316907Gold flowering stage 7.444
SRR8316908Gold flowering stage 7.565
SRP132670SRR6706286Control20.733
SRR6706287Light intensity 50%24.063
SRR6706288Light intensity 20%26.591
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.631
CNS0095593Slightly white alabastrum(diploid) 240.858
CNS0095594Slightly white alabastrum(diploid) 341.218
CNS0095595Whole white alabastrum(diploid) 247.929
CNS0095596Whole white alabastrum(diploid) 354.858
CNS0095597Whole white alabastrum(diploid) 445.604
CNS0095598Silvery flower (diploied) 118.032
CNS0095599Silvery flower (diploied) 217.107
CNS0095600Silvery flower (diploied) 318.237
CNS0095601Golden flower (diploid) 110.822
CNS0095602Golden flower (diploid) 216.924
CNS0095603Golden flower (diploid) 314.258
CNS0095604Slightly white alabastrum(tetraploid) 163.204
CNS0095605Slightly white alabastrum(tetraploid) 258.766
CNS0095606Slightly white alabastrum(tetraploid) 368.381
CNS0095607Whole white alabastrum(tetraploid) 162.151
CNS0095608Whole white alabastrum(tetraploid) 253.166
CNS0095609Whole white alabastrum(tetraploid) 360.910
CNS0095610Silvery flower (tetraploid) 116.725
CNS0095611Silvery flower (tetraploid) 216.882
CNS0095612Silvery flower (tetraploid) 313.770
CNS0095613Golden flower (tetraploid) 18.110
CNS0095614Golden flower (tetraploid) 218.633
CNS0095615Golden flower (tetraploid) 37.925
CRA001975CRR073297Stem 135.581
CRR073298Stem 230.766
CRR073299Stem 330.652
CRR073300Leaf 140.061
CRR073301Leaf 236.307
CRR073302Leaf 335.982
CRR073303Juvenile bud 136.399
CRR073304Juvenile bud 233.634
CRR073305Juvenile bud 336.065
CRR073306Third green 132.360
CRR073307Third green 230.509
CRR073308Third green 329.285
CRR073309Second white 15.977
CRR073310Second white 26.337
CRR073311Second white 34.148
CRR073312Silver flowering 13.849
CRR073313Silver flowering 25.049
CRR073314Silver flowering 33.856
CRR073315Gold flowering 18.485
CRR073316Gold flowering 29.868
CRR073317Gold flowering 39.443
CRR073318Tawny withering 160.041
CRR073319Tawny withering 248.526
CRR073320Tawny withering 389.404