Detail information of GWHGAAZE017227


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079214.11.9595E-93PREDICTED: RING-H2 finger protein ATL60-like [Sesamum indicum]
Swissprottr|Q9XF63|ATL3_ARATH1E-58RING-H2 finger protein ATL3
trEMBLtr|M1A1E4|M1A1E4_SOLTU3E-91Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400012552}
TAIR10AT1G53820.14E-35RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene28282232829158+
GWHAAZE00000005mRNA28282232829158+
GWHAAZE00000005exon28282232829158+
GWHAAZE00000005CDS28282232829158+
Transcript Sequence

Network for GWHGAAZE017227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21021452.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.827
SRR3591706second leaf0.000
SRR3591707mature leaf0.178
SRR3591708Shoot apex0.000
SRR3591709Stem1.420
SRR3591710White floral bud0.746
SRR3591711White flower1.044
SRR3591712Green floral bud2.020
SRR3591713Yellow flower0.150
SRP173429 SRR8316895Juvenile bud stage 0.832
SRR8316896Juvenile bud stage 0.505
SRR8316897Juvenile bud stage 0.674
SRR8316894Third green stage 0.828
SRR8316900Third green stage 1.654
SRR8316901Third green stage 1.389
SRR8316898Complete white stage 0.067
SRR8316899Complete white stage 1.797
SRR8316903Complete white stage 0.286
SRR8316902Silver flowering stage0.152
SRR8316904Silver flowering stage0.172
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.379
SRR8316907Gold flowering stage 0.533
SRR8316908Gold flowering stage 1.406
SRP132670SRR6706286Control2.428
SRR6706287Light intensity 50%1.798
SRR6706288Light intensity 20%2.202
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.517
CNS0095593Slightly white alabastrum(diploid) 22.025
CNS0095594Slightly white alabastrum(diploid) 31.039
CNS0095595Whole white alabastrum(diploid) 21.437
CNS0095596Whole white alabastrum(diploid) 30.914
CNS0095597Whole white alabastrum(diploid) 41.129
CNS0095598Silvery flower (diploied) 11.794
CNS0095599Silvery flower (diploied) 21.000
CNS0095600Silvery flower (diploied) 30.443
CNS0095601Golden flower (diploid) 10.719
CNS0095602Golden flower (diploid) 21.500
CNS0095603Golden flower (diploid) 31.100
CNS0095604Slightly white alabastrum(tetraploid) 12.632
CNS0095605Slightly white alabastrum(tetraploid) 21.535
CNS0095606Slightly white alabastrum(tetraploid) 34.461
CNS0095607Whole white alabastrum(tetraploid) 11.982
CNS0095608Whole white alabastrum(tetraploid) 21.542
CNS0095609Whole white alabastrum(tetraploid) 34.816
CNS0095610Silvery flower (tetraploid) 10.324
CNS0095611Silvery flower (tetraploid) 20.360
CNS0095612Silvery flower (tetraploid) 30.216
CNS0095613Golden flower (tetraploid) 10.061
CNS0095614Golden flower (tetraploid) 20.332
CNS0095615Golden flower (tetraploid) 30.103
CRA001975CRR073297Stem 11.697
CRR073298Stem 21.846
CRR073299Stem 32.910
CRR073300Leaf 11.247
CRR073301Leaf 22.261
CRR073302Leaf 32.489
CRR073303Juvenile bud 11.057
CRR073304Juvenile bud 21.035
CRR073305Juvenile bud 32.394
CRR073306Third green 10.379
CRR073307Third green 20.398
CRR073308Third green 30.064
CRR073309Second white 10.000
CRR073310Second white 20.339
CRR073311Second white 30.055
CRR073312Silver flowering 10.587
CRR073313Silver flowering 20.501
CRR073314Silver flowering 31.144
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.055
CRR073317Gold flowering 30.057
CRR073318Tawny withering 13.201
CRR073319Tawny withering 22.652
CRR073320Tawny withering 31.137