Gene detail

Detail information of GWHGAAZE017229

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002265171.1	PREDICTED: pectinesterase [Vitis vinifera]
Swissprot	tr\|Q43143\|PMEU1_SOLLC	Pectinesterase U1 (Precursor)
trEMBL	tr\|F6HXK8\|F6HXK8_VITVI	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G14310.1	pectin methylesterase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2900568	2905862	+
GWHAAZE00000005	mRNA	2900568	2905862	+
GWHAAZE00000005	exon	2900568	2901624	+
GWHAAZE00000005	exon	2905067	2905862	+
GWHAAZE00000005	CDS	2900568	2901624	+
GWHAAZE00000005	CDS	2905067	2905758	+
GWHAAZE00000005	three_prime_UTR	2905759	2905862	+

Transcript Sequence
>GWHTAAZE017249 ATGACAGACACCGACCAATTCTCCACCGGATCCGGCAAACTCGGTACCATTTCCAAAAACAAGAAAAAGCTCTTCCTATCCCTCTTTGCAACTCTCCTTCTCTTAGCCACCGTAATCGGCATTGTCGCCAGAGTAAAGTCTCGAAACAGAGACTCCGACTCCGACTCCGACAATATCAGAGCCACCTCAGCTCACACCGTACTCAAATCCTCTTGCAGCAGTACATTATATCCCGATTTATGCTACTCCGCCATTGCCACTGTACCTGGATTGAGCAAAAAAGTAACGAACCAAAGGGACGTCATTAAATTGTCCTTAAACATCACTACCGAGGCTGTGGAGCACAATTTCTTCACAATCCAAAAGCTAATCGCTCTTAAAAAACTTACAAAACGAGAGAATATTGCACTCCACGACTGTCTCGAGACGATTGATGAAACTCTGGACGAACTTCACAAGGCTGTGGAAGATCTCGAAGATTACCCTGCAAAAAAAACCCTAACGGAGCACGCCGGGGACCTCAAAACCCTAATCAGCTCCGCGATAACCAATCAGGAGACTTGCCTCGACGGATTCTCACACGACGGCGCCGATAAGCACTTGCGAGAGGTGTTGGTGAAAGGACAGATGCACGTGGAGAAGATGTGCAGTAATGCTTTGGCTATGATTAAGAACATGACGGATACTGATATGGAAAATGAGGCCAAGATAATGGGGAGGAAGTTGAAGGAGGAGAGGAATAGGGGTGGGTGGCCGGAGTGGCTGTCGGCCGGGGATCGGAGGTTGTTGCAGTCGTCGACTGTGACGCCGAATGTGGTGGTTGCGGCGGACGGGAGTGGGGATTATATGACGGTGACGGAGGCGGTGGAAGCGGCGCCGAATAAGAGCAGTACGAGATATGTGATAAGTATAAAAGCCGGGGTTTATAGGGAAAATGTGGAGGTGCCAAAGAAGAAGACCAACATAATGTTTATGGGGGAAGGAAGAGCTAACACTATCATTACCGGAAGTAGGAACGTCGCCGATGGCAGCACTACCTTCCACTCTGCCACCGTTGCCGCGGTGGGTCAAGGATTCTTAGCACGGGATATAACCTTTCAAAATACAGCTGGCCCCTCAAAGCACCAAGCTGTGGCCCTCCGCGTAGGGGCTGATTTGTCTGCATTTTATCAATGCGATGTGTTAGGATACCAAGACACTCTATACGTCCATTCAAATCGTCAATATTACATAAATTGCCTAGTAGCAGGCACAGTCGATTTCATCTTTGGTAACGCTGCAGCTGTGCTACAAGATTGTGACATCCACGCTCGTCGTCCCGATTCTAACCAAAGAAACATGGTTACAGCTCAAGGTAGGACTGACCCTAACCAGAATACTGGCATTATTATTCAAAAATCAAGAATAGGAGCCACATCCGATTTACGGCCAGTCCAGAGTAGTTTTCCGACATATCTTGGGAGGCCATGGAAGGAATATTCGAGGACGGTGATTATGCAGTCAATTATATCAGATGTGATTCAACCTGCTGGGTGGTTCGAGTGGAATGGGAATTTTGCATTGGACACGTTGTTCTATGGGGAGTATCAAAATAGCGGGCCAGGTGCTGGGACATCTGCTAGAGTGAGTTGGAAGGGGTTTAAGGTGATTACTAATGCAACTGAGGCTCAAGGGTTCGCTCCCGGGGTTTTCATTGCTGGTAATACTTGGTTGGATTCTACTAGCTTTCCGTTTTCTCTTGGCTTATGAAAATATTAATTCTTTTTTTTTTTTGGATGGTTGCATTTGGGAGGGAAGGCCAAAAAGTGGATATTTAATTATTAATCAATGATAATTTTGCTATTCCTCCTAAA

Network for GWHGAAZE017229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	68	222	2.80E-29
PF01095.20	Pectinesterase	271	568	1.90E-147

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.415
	SRR3591706	second leaf	7.298
	SRR3591707	mature leaf	2.103
	SRR3591708	Shoot apex	24.879
	SRR3591709	Stem	7.822
	SRR3591710	White floral bud	123.692
	SRR3591711	White flower	57.199
	SRR3591712	Green floral bud	70.280
	SRR3591713	Yellow flower	32.314
SRP173429	SRR8316895	Juvenile bud stage	20.819
	SRR8316896	Juvenile bud stage	18.609
	SRR8316897	Juvenile bud stage	6.599
	SRR8316894	Third green stage	9.546
	SRR8316900	Third green stage	46.721
	SRR8316901	Third green stage	34.376
	SRR8316898	Complete white stage	25.514
	SRR8316899	Complete white stage	75.974
	SRR8316903	Complete white stage	34.794
	SRR8316902	Silver flowering stage	16.915
	SRR8316904	Silver flowering stage	56.916
	SRR8316905	Silver flowering stage	11.243
	SRR8316906	Gold flowering stage	31.879
	SRR8316907	Gold flowering stage	19.292
	SRR8316908	Gold flowering stage	41.852
SRP132670	SRR6706286	Control	51.989
	SRR6706287	Light intensity 50%	51.232
	SRR6706288	Light intensity 20%	52.403
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.386
	CNS0095593	Slightly white alabastrum(diploid) 2	33.873
	CNS0095594	Slightly white alabastrum(diploid) 3	29.550
	CNS0095595	Whole white alabastrum(diploid) 2	31.018
	CNS0095596	Whole white alabastrum(diploid) 3	59.567
	CNS0095597	Whole white alabastrum(diploid) 4	36.213
	CNS0095598	Silvery flower (diploied) 1	67.604
	CNS0095599	Silvery flower (diploied) 2	91.771
	CNS0095600	Silvery flower (diploied) 3	72.177
	CNS0095601	Golden flower (diploid) 1	50.293
	CNS0095602	Golden flower (diploid) 2	74.971
	CNS0095603	Golden flower (diploid) 3	70.847
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.208
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.952
	CNS0095610	Silvery flower (tetraploid) 1	100.137
	CNS0095611	Silvery flower (tetraploid) 2	59.275
	CNS0095612	Silvery flower (tetraploid) 3	67.991
	CNS0095613	Golden flower (tetraploid) 1	4.392
	CNS0095614	Golden flower (tetraploid) 2	53.447
	CNS0095615	Golden flower (tetraploid) 3	64.555
CRA001975	CRR073297	Stem 1	32.901
	CRR073298	Stem 2	35.885
	CRR073299	Stem 3	42.247
	CRR073300	Leaf 1	79.307
	CRR073301	Leaf 2	66.788
	CRR073302	Leaf 3	58.882
	CRR073303	Juvenile bud 1	144.890
	CRR073304	Juvenile bud 2	102.870
	CRR073305	Juvenile bud 3	180.172
	CRR073306	Third green 1	83.450
	CRR073307	Third green 2	170.472
	CRR073308	Third green 3	286.232
	CRR073309	Second white 1	24.608
	CRR073310	Second white 2	49.800
	CRR073311	Second white 3	10.831
	CRR073312	Silver flowering 1	1.657
	CRR073313	Silver flowering 2	10.768
	CRR073314	Silver flowering 3	5.410
	CRR073315	Gold flowering 1	6.829
	CRR073316	Gold flowering 2	9.553
	CRR073317	Gold flowering 3	12.639
	CRR073318	Tawny withering 1	51.245
	CRR073319	Tawny withering 2	35.597
	CRR073320	Tawny withering 3	24.640