Gene detail

Detail information of GWHGAAZE017232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001241191.1	1.5094E-173	uncharacterized protein LOC100799919 [Glycine max]
Swissprot	tr\|Q9M4T8\|PSA5_SOYBN	2E-175	Proteasome subunit alpha type-5
trEMBL	tr\|C6TGU2\|C6TGU2_SOYBN	6E-174	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT3G14290.1	3E-134	20S proteasome alpha subunit E2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2947764	2959432	-
GWHAAZE00000005	mRNA	2947764	2959432	-
GWHAAZE00000005	exon	2959419	2959432	-
GWHAAZE00000005	exon	2959208	2959289	-
GWHAAZE00000005	exon	2958997	2959077	-
GWHAAZE00000005	exon	2951871	2951984	-
GWHAAZE00000005	exon	2951692	2951793	-
GWHAAZE00000005	exon	2950928	2950986	-
GWHAAZE00000005	exon	2949108	2949210	-
GWHAAZE00000005	exon	2948369	2948434	-
GWHAAZE00000005	exon	2947764	2947856	-
GWHAAZE00000005	CDS	2959419	2959432	-
GWHAAZE00000005	CDS	2959208	2959289	-
GWHAAZE00000005	CDS	2958997	2959077	-
GWHAAZE00000005	CDS	2951871	2951984	-
GWHAAZE00000005	CDS	2951692	2951793	-
GWHAAZE00000005	CDS	2950928	2950986	-
GWHAAZE00000005	CDS	2949108	2949210	-
GWHAAZE00000005	CDS	2948369	2948434	-
GWHAAZE00000005	CDS	2947764	2947856	-

Transcript Sequence
>GWHTAAZE017252 ATGTTTCTCACCAGGACTGAGTATGATAGAGGTGTCAATACCTTCTCTCCTGAAGGCCGATTGTTTCAGGTTGAATATGCCATTGAGGCCATCAAGTTGGGATCAACTGCTATCGGGTTGAAGACTAAGGAGGGGGTCGTTCTTGCTGTTGAGAAGCGTATTACCTCACCACTTCTGGAGCCCAGCAGTGTGGAGAAGATTATGGAAATTGATGAGCATATTGGCTGTGCAATGAGTGGATTAATTGCTGATGCACGTACACTAGTTGAACATGCACGAGTTGAAACTCAGAATCATAGGTTTTCTTATGGTGAGCCTATGACTGTTGAATCTACAACACAGGCCCTGTGTGATTTAGCCTTGCGATTTGGTGAGGGTGATGAAGAATCTATGTCTCGACCTTTTGGTGTTTCTCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTTATTCTATACAGATCCTTCAGGAACATTTTGGCAATGCAATGGAAAAGCAATTGGTTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAATATAACAAGGACCTGACACTAAAAGAAGCCGAAACAATAGCTCTTTCCATCCTGAAGCAGGTTATGGAAGAAAAAGTAACCCCAAATAATGTGGATATTGCAAAGGTAGCCCCAACTTACCATTTGTACACACCTTCTGAGGTGGAGGCTGTTATCAGCCGCCTGTGA

Network for GWHGAAZE017232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	8	30	1.20E-13
PF00227.27	Proteasome	31	218	1.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02729	PSMA5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.288
	SRR3591706	second leaf	44.359
	SRR3591707	mature leaf	33.512
	SRR3591708	Shoot apex	67.029
	SRR3591709	Stem	58.468
	SRR3591710	White floral bud	61.298
	SRR3591711	White flower	70.180
	SRR3591712	Green floral bud	73.967
	SRR3591713	Yellow flower	54.517
SRP173429	SRR8316895	Juvenile bud stage	30.583
	SRR8316896	Juvenile bud stage	40.512
	SRR8316897	Juvenile bud stage	8.615
	SRR8316894	Third green stage	17.769
	SRR8316900	Third green stage	52.328
	SRR8316901	Third green stage	49.005
	SRR8316898	Complete white stage	18.417
	SRR8316899	Complete white stage	63.969
	SRR8316903	Complete white stage	25.537
	SRR8316902	Silver flowering stage	13.298
	SRR8316904	Silver flowering stage	22.938
	SRR8316905	Silver flowering stage	9.920
	SRR8316906	Gold flowering stage	32.766
	SRR8316907	Gold flowering stage	38.616
	SRR8316908	Gold flowering stage	16.282
SRP132670	SRR6706286	Control	19.621
	SRR6706287	Light intensity 50%	21.830
	SRR6706288	Light intensity 20%	26.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.970
	CNS0095593	Slightly white alabastrum(diploid) 2	62.094
	CNS0095594	Slightly white alabastrum(diploid) 3	47.324
	CNS0095595	Whole white alabastrum(diploid) 2	50.522
	CNS0095596	Whole white alabastrum(diploid) 3	50.927
	CNS0095597	Whole white alabastrum(diploid) 4	40.049
	CNS0095598	Silvery flower (diploied) 1	45.437
	CNS0095599	Silvery flower (diploied) 2	43.626
	CNS0095600	Silvery flower (diploied) 3	36.809
	CNS0095601	Golden flower (diploid) 1	36.241
	CNS0095602	Golden flower (diploid) 2	27.802
	CNS0095603	Golden flower (diploid) 3	28.598
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.335
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.827
	CNS0095610	Silvery flower (tetraploid) 1	24.477
	CNS0095611	Silvery flower (tetraploid) 2	28.983
	CNS0095612	Silvery flower (tetraploid) 3	17.325
	CNS0095613	Golden flower (tetraploid) 1	9.009
	CNS0095614	Golden flower (tetraploid) 2	16.435
	CNS0095615	Golden flower (tetraploid) 3	8.978
CRA001975	CRR073297	Stem 1	46.777
	CRR073298	Stem 2	43.083
	CRR073299	Stem 3	42.378
	CRR073300	Leaf 1	48.198
	CRR073301	Leaf 2	44.695
	CRR073302	Leaf 3	57.741
	CRR073303	Juvenile bud 1	57.270
	CRR073304	Juvenile bud 2	43.389
	CRR073305	Juvenile bud 3	44.623
	CRR073306	Third green 1	14.521
	CRR073307	Third green 2	17.188
	CRR073308	Third green 3	16.202
	CRR073309	Second white 1	30.082
	CRR073310	Second white 2	27.109
	CRR073311	Second white 3	19.807
	CRR073312	Silver flowering 1	12.890
	CRR073313	Silver flowering 2	12.686
	CRR073314	Silver flowering 3	11.490
	CRR073315	Gold flowering 1	76.019
	CRR073316	Gold flowering 2	72.366
	CRR073317	Gold flowering 3	56.866
	CRR073318	Tawny withering 1	53.142
	CRR073319	Tawny withering 2	50.056
	CRR073320	Tawny withering 3	50.691