Gene detail

Detail information of GWHGAAZE017243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006426761.1	2.9027E-128	hypothetical protein CICLE_v10026416mg [Citrus clementina]
Swissprot	tr\|Q9LQI7\|CIA30_ARATH	3E-119	Probable complex I intermediate-associated protein 30
trEMBL	tr\|V4SHB9\|V4SHB9_9ROSI	1E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESR40002.1}
TAIR10	AT1G17350.1	5E-95	NADH:ubiquinone oxidoreductase intermediate-associated protein 30

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3145294	3148720	+
GWHAAZE00000005	mRNA	3145294	3148720	+
GWHAAZE00000005	exon	3145294	3145456	+
GWHAAZE00000005	exon	3145904	3145960	+
GWHAAZE00000005	exon	3146570	3146697	+
GWHAAZE00000005	exon	3147572	3147652	+
GWHAAZE00000005	exon	3147796	3147898	+
GWHAAZE00000005	exon	3148515	3148720	+
GWHAAZE00000005	CDS	3145294	3145456	+
GWHAAZE00000005	CDS	3145904	3145960	+
GWHAAZE00000005	CDS	3146570	3146697	+
GWHAAZE00000005	CDS	3147572	3147652	+
GWHAAZE00000005	CDS	3147796	3147898	+
GWHAAZE00000005	CDS	3148515	3148720	+

Transcript Sequence
>GWHTAAZE017263 ATGTTTGCACGACCTTTGTTCTATCATCTGTCTCCACTGTCATTTGTAGCCCTCGCATGGAACGCTGAAGACTTGATTCCTCCAAGTGAAAAATATATTTTCAATTTCAACTCAAAGGAAGAAATCAAGAAATGGCATCTATATTCTGATTCTGAATATGGAGGTCTGTCCTCGGCGTCGTTAGAGATCACAGATGCTGGAAATGGATCAAGTGATATTGGCTTCCGAACTCGATTTGTTTTGATATATATGACAGGGATATTCTCTGGGAACCTCTCTATGGACATTGTTGAGGGTACAAAATGGAATATCTCTCGAGGTGGCTTCTGTGGAATGCGGTCTAGAAAGTTTGACGGCTATATTGATTTGGACCCATATGACACTATAGCACTAAAACTTAAAGGAGATGGGAGATGTTACATATCAACTATTTATACGGAGAATTGGGTGAATTCTCCTGGACAGCAGGAAGATAACTCATGGCAAGCTTTTGTTATCGTGCCAAAAGGCGACTGGTATATTGCGAAGGCAATGGGGTTCTTTTTACAGATTCCTCTTGCTCGATATCTACCAACATGGAGAGGCAATGTTATAGACGTTGAGTTGGAAATGAATCCATCCCGAGTCCTTGGCATGTCTCTGTCTGTGAATGCAGAGGGTGGATTCCCAGGCGCCAAGTCTGGCCCAGGTGATTTCCGGGTTGAAATTGACTGGATCAAAGCCTTGAGAACACAGTAA

Network for GWHGAAZE017243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08547.13	CIA30	34	236	4.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18159	NDUFAF1, CIA30	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.135
	SRR3591706	second leaf	6.460
	SRR3591707	mature leaf	7.366
	SRR3591708	Shoot apex	14.626
	SRR3591709	Stem	14.051
	SRR3591710	White floral bud	6.796
	SRR3591711	White flower	14.982
	SRR3591712	Green floral bud	12.502
	SRR3591713	Yellow flower	12.451
SRP173429	SRR8316895	Juvenile bud stage	12.503
	SRR8316896	Juvenile bud stage	20.800
	SRR8316897	Juvenile bud stage	10.981
	SRR8316894	Third green stage	7.956
	SRR8316900	Third green stage	21.935
	SRR8316901	Third green stage	24.682
	SRR8316898	Complete white stage	7.810
	SRR8316899	Complete white stage	30.350
	SRR8316903	Complete white stage	9.940
	SRR8316902	Silver flowering stage	7.917
	SRR8316904	Silver flowering stage	8.539
	SRR8316905	Silver flowering stage	3.961
	SRR8316906	Gold flowering stage	15.416
	SRR8316907	Gold flowering stage	18.019
	SRR8316908	Gold flowering stage	17.051
SRP132670	SRR6706286	Control	10.710
	SRR6706287	Light intensity 50%	10.603
	SRR6706288	Light intensity 20%	12.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.368
	CNS0095593	Slightly white alabastrum(diploid) 2	23.371
	CNS0095594	Slightly white alabastrum(diploid) 3	14.441
	CNS0095595	Whole white alabastrum(diploid) 2	15.385
	CNS0095596	Whole white alabastrum(diploid) 3	18.691
	CNS0095597	Whole white alabastrum(diploid) 4	19.012
	CNS0095598	Silvery flower (diploied) 1	18.564
	CNS0095599	Silvery flower (diploied) 2	14.928
	CNS0095600	Silvery flower (diploied) 3	18.176
	CNS0095601	Golden flower (diploid) 1	21.769
	CNS0095602	Golden flower (diploid) 2	19.581
	CNS0095603	Golden flower (diploid) 3	16.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.405
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.859
	CNS0095610	Silvery flower (tetraploid) 1	17.431
	CNS0095611	Silvery flower (tetraploid) 2	21.363
	CNS0095612	Silvery flower (tetraploid) 3	15.301
	CNS0095613	Golden flower (tetraploid) 1	16.662
	CNS0095614	Golden flower (tetraploid) 2	15.242
	CNS0095615	Golden flower (tetraploid) 3	11.507
CRA001975	CRR073297	Stem 1	15.967
	CRR073298	Stem 2	11.092
	CRR073299	Stem 3	9.627
	CRR073300	Leaf 1	15.161
	CRR073301	Leaf 2	13.783
	CRR073302	Leaf 3	17.007
	CRR073303	Juvenile bud 1	15.144
	CRR073304	Juvenile bud 2	9.247
	CRR073305	Juvenile bud 3	10.682
	CRR073306	Third green 1	2.878
	CRR073307	Third green 2	4.828
	CRR073308	Third green 3	5.028
	CRR073309	Second white 1	8.682
	CRR073310	Second white 2	5.631
	CRR073311	Second white 3	4.604
	CRR073312	Silver flowering 1	1.908
	CRR073313	Silver flowering 2	3.924
	CRR073314	Silver flowering 3	3.724
	CRR073315	Gold flowering 1	7.458
	CRR073316	Gold flowering 2	11.762
	CRR073317	Gold flowering 3	7.355
	CRR073318	Tawny withering 1	15.808
	CRR073319	Tawny withering 2	13.125
	CRR073320	Tawny withering 3	12.367