Gene detail

Detail information of GWHGAAZE017246

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW68861.1	2.25265E-27	hypothetical protein EUGRSUZ_F02455 [Eucalyptus grandis]
Swissprot	tr\|Q9LZD3\|E70A1_ARATH	0.00000007	Exocyst complex component EXO70A1
trEMBL	tr\|K4BN22\|K4BN22_SOLLC	3E-30	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g122240.2.1}
TAIR10	AT1G72470.1	4E-19	exocyst subunit exo70 family protein D1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3170660	3172094	-
GWHAAZE00000005	mRNA	3170660	3172094	-
GWHAAZE00000005	exon	3170660	3171106	-
GWHAAZE00000005	exon	3171317	3171453	-
GWHAAZE00000005	exon	3171552	3171743	-
GWHAAZE00000005	exon	3171935	3172094	-
GWHAAZE00000005	CDS	3171935	3172094	-
GWHAAZE00000005	CDS	3171552	3171743	-
GWHAAZE00000005	CDS	3171317	3171453	-
GWHAAZE00000005	CDS	3170660	3171106	-

Transcript Sequence
>GWHTAAZE017266 ATGGCGATAGCTCCAAATTTCATTACTACTTGCAAGCAGTCGACATCATCCAGCAGTCAGTTAGTCTCCCTGGTTATCAGACCCGATAAAGAAGCCATCTGTATGGCAGAAGCTCGACTCAAGCTCAATTTTCTAAATACAATGACTGGAGTAACTGCGAGTGGAGTACGAAGGGATTTCCTCAAGACCAGTTTGAAGCAAATAGGGATCGAGAAATTGAGCAGCTGTGTTACCCAAGGTCTTTTCTTGGAAAAGTTCAAGAAAAAGATTGATCAGTTGAAAAGAGCAACTACAGTGTGTTATTCAATTTTCTTTTCAAGGGAAAAGAAACTCTTTTCACAGATCTTTGATGATAAGTTGTTCAAGTTTTTCGACCTCTCCAAAGTGTTGCTGAATAGCTGGGTGCTTCTGGAATGTACAAATTTTTCTAGGGCTAAAGTGCCGGAAGGTACACTAGTCATGCACTCGTATGATGAGATTGGTGAGAAGGACGGGCAAAGTTCTCTCCTCCATTTGGTTTTGATCATCGTGGTTTTACTATTCAAACTGGAGGATAAATCCAAGTTTTACAAAGATCCCTCTTTGCCTCATTTGTTCACGGCAAGGAATCTTCACTACATTGTACAAAGTATCATACAAAGTATCAAAGAATCACCAGAATTGGAAGAGATGATCCAGGAGGAGAATACAAACAAGTTGAGTAAGAATTGTTTAAGGCAGGCAATTACTAGCTATCAGAGCTTGACCTGTGAGAGGATGTTGTACTGTTCAAGGGACAACGCAGAAGGAGCGAGGCATTTGAGCAAGTGTTTTTCTCCAACGAGCAACTTGAGGAGGATCAAGTCCTTCAATTCTATGTTTGAAGAGATTCATTCGACTCAAGGAAGATGGTGGTACAACATTTGGAGCTGCGCGGAGAGCTTCGTCTTTCAATAG

Network for GWHGAAZE017246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03081.16	Exo70	165	297	2.50E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07195	EXOC7, EXO70	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name
GO:0006887	biological_process	exocytosis
GO:0000145	cellular_component	exocyst

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.040
	SRR3591706	second leaf	0.199
	SRR3591707	mature leaf	0.609
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.600
	SRR3591710	White floral bud	0.288
	SRR3591711	White flower	0.222
	SRR3591712	Green floral bud	0.232
	SRR3591713	Yellow flower	0.477
SRP173429	SRR8316895	Juvenile bud stage	0.150
	SRR8316896	Juvenile bud stage	0.363
	SRR8316897	Juvenile bud stage	0.090
	SRR8316894	Third green stage	0.254
	SRR8316900	Third green stage	0.334
	SRR8316901	Third green stage	0.285
	SRR8316898	Complete white stage	0.365
	SRR8316899	Complete white stage	0.527
	SRR8316903	Complete white stage	0.444
	SRR8316902	Silver flowering stage	0.444
	SRR8316904	Silver flowering stage	0.506
	SRR8316905	Silver flowering stage	0.142
	SRR8316906	Gold flowering stage	0.845
	SRR8316907	Gold flowering stage	0.509
	SRR8316908	Gold flowering stage	0.593
SRP132670	SRR6706286	Control	0.352
	SRR6706287	Light intensity 50%	0.265
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.060
	CNS0095593	Slightly white alabastrum(diploid) 2	0.064
	CNS0095594	Slightly white alabastrum(diploid) 3	0.058
	CNS0095595	Whole white alabastrum(diploid) 2	0.075
	CNS0095596	Whole white alabastrum(diploid) 3	0.098
	CNS0095597	Whole white alabastrum(diploid) 4	0.291
	CNS0095598	Silvery flower (diploied) 1	0.056
	CNS0095599	Silvery flower (diploied) 2	0.004
	CNS0095600	Silvery flower (diploied) 3	0.573
	CNS0095601	Golden flower (diploid) 1	0.138
	CNS0095602	Golden flower (diploid) 2	0.546
	CNS0095603	Golden flower (diploid) 3	0.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.117
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.062
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.086
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.346
	CNS0095610	Silvery flower (tetraploid) 1	0.303
	CNS0095611	Silvery flower (tetraploid) 2	0.399
	CNS0095612	Silvery flower (tetraploid) 3	0.326
	CNS0095613	Golden flower (tetraploid) 1	0.417
	CNS0095614	Golden flower (tetraploid) 2	0.377
	CNS0095615	Golden flower (tetraploid) 3	1.230
CRA001975	CRR073297	Stem 1	0.532
	CRR073298	Stem 2	0.118
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.166
	CRR073301	Leaf 2	0.234
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.011
	CRR073319	Tawny withering 2	0.327
	CRR073320	Tawny withering 3	0.000