Detail information of GWHGAAZE017251


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI35831.31.0759E-112unnamed protein product [Vitis vinifera]
Swissprottr|Q9C9P4|KASC2_ARATH2E-983-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBLtr|F6HXQ7|F6HXQ7_VITVI6E-113Putative uncharacterized protein {ECO:0000313|EMBL:CCB59264.1}
TAIR10AT1G74960.35E-63fatty acid biosynthesis 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene32333213236722-
GWHAAZE00000005mRNA32333213236722-
GWHAAZE00000005exon32366723236722-
GWHAAZE00000005exon32364953236579-
GWHAAZE00000005exon32361303236284-
GWHAAZE00000005exon32359583236038-
GWHAAZE00000005exon32336503233709-
GWHAAZE00000005exon32333213233446-
GWHAAZE00000005CDS32366723236722-
GWHAAZE00000005CDS32364953236579-
GWHAAZE00000005CDS32361303236284-
GWHAAZE00000005CDS32359583236038-
GWHAAZE00000005CDS32336503233709-
GWHAAZE00000005CDS32333213233446-
Transcript Sequence

Network for GWHGAAZE017251

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02801.23Ketoacyl-synt_C241381.10E-33
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K09458fabF, OXSM, CEM1 Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Biotin metabolismmap00780

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.640
SRR3591706second leaf52.613
SRR3591707mature leaf44.720
SRR3591708Shoot apex43.582
SRR3591709Stem11.278
SRR3591710White floral bud9.500
SRR3591711White flower10.001
SRR3591712Green floral bud26.180
SRR3591713Yellow flower8.288
SRP173429 SRR8316895Juvenile bud stage 65.379
SRR8316896Juvenile bud stage 67.963
SRR8316897Juvenile bud stage 35.666
SRR8316894Third green stage 13.463
SRR8316900Third green stage 27.694
SRR8316901Third green stage 26.720
SRR8316898Complete white stage 9.297
SRR8316899Complete white stage 26.881
SRR8316903Complete white stage 11.173
SRR8316902Silver flowering stage5.171
SRR8316904Silver flowering stage4.305
SRR8316905Silver flowering stage1.103
SRR8316906Gold flowering stage 4.562
SRR8316907Gold flowering stage 11.179
SRR8316908Gold flowering stage 6.929
SRP132670SRR6706286Control23.165
SRR6706287Light intensity 50%23.849
SRR6706288Light intensity 20%23.655
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.913
CNS0095593Slightly white alabastrum(diploid) 230.586
CNS0095594Slightly white alabastrum(diploid) 346.524
CNS0095595Whole white alabastrum(diploid) 227.302
CNS0095596Whole white alabastrum(diploid) 325.997
CNS0095597Whole white alabastrum(diploid) 424.368
CNS0095598Silvery flower (diploied) 140.461
CNS0095599Silvery flower (diploied) 234.761
CNS0095600Silvery flower (diploied) 313.919
CNS0095601Golden flower (diploid) 130.241
CNS0095602Golden flower (diploid) 216.176
CNS0095603Golden flower (diploid) 314.049
CNS0095604Slightly white alabastrum(tetraploid) 137.385
CNS0095605Slightly white alabastrum(tetraploid) 238.607
CNS0095606Slightly white alabastrum(tetraploid) 334.690
CNS0095607Whole white alabastrum(tetraploid) 127.829
CNS0095608Whole white alabastrum(tetraploid) 223.258
CNS0095609Whole white alabastrum(tetraploid) 329.782
CNS0095610Silvery flower (tetraploid) 119.978
CNS0095611Silvery flower (tetraploid) 222.368
CNS0095612Silvery flower (tetraploid) 39.391
CNS0095613Golden flower (tetraploid) 17.040
CNS0095614Golden flower (tetraploid) 211.879
CNS0095615Golden flower (tetraploid) 31.134
CRA001975CRR073297Stem 160.595
CRR073298Stem 236.348
CRR073299Stem 369.690
CRR073300Leaf 116.878
CRR073301Leaf 220.908
CRR073302Leaf 314.394
CRR073303Juvenile bud 113.516
CRR073304Juvenile bud 28.300
CRR073305Juvenile bud 312.814
CRR073306Third green 11.992
CRR073307Third green 21.310
CRR073308Third green 31.773
CRR073309Second white 11.387
CRR073310Second white 21.418
CRR073311Second white 31.266
CRR073312Silver flowering 11.591
CRR073313Silver flowering 22.247
CRR073314Silver flowering 30.377
CRR073315Gold flowering 139.802
CRR073316Gold flowering 245.456
CRR073317Gold flowering 330.182
CRR073318Tawny withering 115.812
CRR073319Tawny withering 213.384
CRR073320Tawny withering 35.863