Detail information of GWHGAAZE017252


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010273891.10PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like isoform X2 [Nelumbo nucifera]
Swissprottr|Q9C9P4|KASC2_ARATH4E-1573-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBLtr|F6HXQ7|F6HXQ7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59264.1}
TAIR10AT1G74960.31E-117fatty acid biosynthesis 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene32387103240994-
GWHAAZE00000005mRNA32387103240994-
GWHAAZE00000005exon32387103238801-
GWHAAZE00000005exon32388943238939-
GWHAAZE00000005exon32390923239187-
GWHAAZE00000005exon32392893239399-
GWHAAZE00000005exon32395003239703-
GWHAAZE00000005exon32398173240022-
GWHAAZE00000005exon32405953240994-
GWHAAZE00000005CDS32405953240994-
GWHAAZE00000005CDS32398173240022-
GWHAAZE00000005CDS32395003239703-
GWHAAZE00000005CDS32392893239399-
GWHAAZE00000005CDS32390923239187-
GWHAAZE00000005CDS32388943238939-
GWHAAZE00000005CDS32387103238801-
Transcript Sequence

Network for GWHGAAZE017252

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00109.27ketoacyl-synt1583801.50E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09458fabF, OXSM, CEM1 Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Biotin metabolismmap00780

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.084
SRR3591706second leaf43.415
SRR3591707mature leaf32.643
SRR3591708Shoot apex25.809
SRR3591709Stem5.873
SRR3591710White floral bud9.388
SRR3591711White flower10.099
SRR3591712Green floral bud17.157
SRR3591713Yellow flower6.018
SRP173429 SRR8316895Juvenile bud stage 42.181
SRR8316896Juvenile bud stage 37.255
SRR8316897Juvenile bud stage 22.853
SRR8316894Third green stage 8.797
SRR8316900Third green stage 15.126
SRR8316901Third green stage 15.303
SRR8316898Complete white stage 4.091
SRR8316899Complete white stage 17.269
SRR8316903Complete white stage 8.104
SRR8316902Silver flowering stage3.323
SRR8316904Silver flowering stage4.565
SRR8316905Silver flowering stage0.986
SRR8316906Gold flowering stage 4.014
SRR8316907Gold flowering stage 4.296
SRR8316908Gold flowering stage 4.467
SRP132670SRR6706286Control34.259
SRR6706287Light intensity 50%35.961
SRR6706288Light intensity 20%35.950
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.306
CNS0095593Slightly white alabastrum(diploid) 27.052
CNS0095594Slightly white alabastrum(diploid) 39.998
CNS0095595Whole white alabastrum(diploid) 28.811
CNS0095596Whole white alabastrum(diploid) 36.715
CNS0095597Whole white alabastrum(diploid) 47.995
CNS0095598Silvery flower (diploied) 115.825
CNS0095599Silvery flower (diploied) 212.635
CNS0095600Silvery flower (diploied) 38.783
CNS0095601Golden flower (diploid) 110.818
CNS0095602Golden flower (diploid) 211.502
CNS0095603Golden flower (diploid) 310.118
CNS0095604Slightly white alabastrum(tetraploid) 112.550
CNS0095605Slightly white alabastrum(tetraploid) 29.881
CNS0095606Slightly white alabastrum(tetraploid) 319.958
CNS0095607Whole white alabastrum(tetraploid) 17.844
CNS0095608Whole white alabastrum(tetraploid) 25.690
CNS0095609Whole white alabastrum(tetraploid) 318.942
CNS0095610Silvery flower (tetraploid) 111.996
CNS0095611Silvery flower (tetraploid) 214.703
CNS0095612Silvery flower (tetraploid) 36.253
CNS0095613Golden flower (tetraploid) 12.250
CNS0095614Golden flower (tetraploid) 25.626
CNS0095615Golden flower (tetraploid) 31.394
CRA001975CRR073297Stem 145.160
CRR073298Stem 223.360
CRR073299Stem 340.226
CRR073300Leaf 115.228
CRR073301Leaf 213.460
CRR073302Leaf 37.824
CRR073303Juvenile bud 17.048
CRR073304Juvenile bud 26.594
CRR073305Juvenile bud 313.111
CRR073306Third green 11.706
CRR073307Third green 21.169
CRR073308Third green 31.538
CRR073309Second white 11.142
CRR073310Second white 21.414
CRR073311Second white 31.165
CRR073312Silver flowering 11.961
CRR073313Silver flowering 22.799
CRR073314Silver flowering 31.562
CRR073315Gold flowering 122.557
CRR073316Gold flowering 233.153
CRR073317Gold flowering 327.296
CRR073318Tawny withering 16.940
CRR073319Tawny withering 25.773
CRR073320Tawny withering 34.739