Gene detail

Detail information of GWHGAAZE017271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072653.1	0	PREDICTED: putative receptor-like protein kinase At1g72540 [Sesamum indicum]
Swissprot	tr\|Q9CAH1\|Y1725_ARATH	3E-166	Putative receptor-like protein kinase At1g72540
trEMBL	tr\|A0A068TR47\|A0A068TR47_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97843.1}
TAIR10	AT2G05940.1	4E-148	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3603928	3605736	-
GWHAAZE00000005	mRNA	3603928	3605736	-
GWHAAZE00000005	exon	3603928	3604496	-
GWHAAZE00000005	exon	3604596	3604719	-
GWHAAZE00000005	exon	3604833	3604969	-
GWHAAZE00000005	exon	3605087	3605222	-
GWHAAZE00000005	exon	3605344	3605736	-
GWHAAZE00000005	CDS	3605344	3605736	-
GWHAAZE00000005	CDS	3605087	3605222	-
GWHAAZE00000005	CDS	3604833	3604969	-
GWHAAZE00000005	CDS	3604596	3604719	-
GWHAAZE00000005	CDS	3603928	3604496	-

Transcript Sequence
>GWHTAAZE017291 ATGTCTCTCAAGATCACTTGGAGAACCATCATAACCAGTTGTTTCAAGCCTCAGAACCAACCCCCCACACACCCAAAGAAAACCCAAAATGTTTGTAAACAAAATTCTTCCAACAGACTATTGCTCTCGGATATAAGTAACTCAGGTTCACAACTCTCGCTGATCAGTGACCTCTCCAATTCTCTCATTGGATGGAACCTTCACATATTCACTCTCGCTGAGATGAAGCTCATCACCCATAACTTCTCTTCGAGTAACTACCTTGGTGAAGGCGGGTTTGGACCTGTTCATAAGGGGTTCATTGATGACAAGATGAGGCCTGCTTTAGAAGCTCAACCTGTTGCTGTTAAATTACTGGATTTGGATGGCAGTCAAGGTCACAAAGAATGGCTGACTGAAGTCATATTCCTCGGACAATTGAGGCATCCTCATCTTGTGAAGTTGATCGGGTATTGTTGTGAGGATGAACATAGGCTTCTTGTTTACGAATACATGGCACGTGGCAACCTTGAGAATCAATTGTTTAGAAGGTACTCTGTTTCCTTGCCATGGTTGACAAGACTAAAAATTGCAGTTGGTGCTGCAAAAGGCCTTGCTTTTCTCCATGGGGAAGACAAACCAGTTATATATAGGGATTTTAAATCTTCCAACATCCTTCTAGACCCCGATTACATTGCCAAGCTCTCTGATTTTGGGCTAGCCAAGGACGGTCCAGAAGGGGATGAGACACATGTAACAACGCGTGTCATGGGCACACATGGATATGCTGCTCCCGAATACATCATGACTGGTCATTTGACAACTATGAGCGATGTATTTAGCTATGGCGTAGTTTTGTTAGAATTATTGACTGGAAGACGGGCCATGGACAAGACTCGTCCGAGGCGAGAGCAGAACCTGGTGGAGTGGGCGAGGCCACTTTTAAAGGATTCTCAGAGGCTAGACCGAATAATGGACCCAAAACTTGAAGGGCAGTACTCAATGCAAGGGGCTAAGAAGGCGGCTGCAGTGGCTTATCAATGCTTGAGCCACAACCCAAAGTCAAGACCGACAATGAGCAATGTGGTTTTGACATTGGAGCCTCTCTTGGGTTTGGACGACATCCCTGTTTCCTTTGTATACATTGTTCCCACAGAAGGTCAAAAGGGAAATGACACTCCAAAGAAAAGAAATGGAAACGGAGCAAAGGAAGAGAAAAGAAAAGATGGCGAGGAAAAGGATTTGGAAAGGAAAGATAATGGTTGTAACCGGGGAAAAAATTGTCTTAGGCATAGACAGAGAATAAGGACATCAAGATCTCGCGCTGTCTACTCTGACACTGCTCTATATTATACTCTTAGGCATGGGGGTGTGAACTAG

Network for GWHGAAZE017271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	85	358	6.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.428
	SRR3591706	second leaf	0.266
	SRR3591707	mature leaf	1.543
	SRR3591708	Shoot apex	0.184
	SRR3591709	Stem	1.198
	SRR3591710	White floral bud	0.513
	SRR3591711	White flower	1.639
	SRR3591712	Green floral bud	0.123
	SRR3591713	Yellow flower	0.712
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.079
	SRR8316899	Complete white stage	0.112
	SRR8316903	Complete white stage	0.045
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.191
	SRR8316908	Gold flowering stage	0.181
SRP132670	SRR6706286	Control	0.154
	SRR6706287	Light intensity 50%	0.137
	SRR6706288	Light intensity 20%	0.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.147
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.084
	CNS0095597	Whole white alabastrum(diploid) 4	0.077
	CNS0095598	Silvery flower (diploied) 1	0.947
	CNS0095599	Silvery flower (diploied) 2	0.450
	CNS0095600	Silvery flower (diploied) 3	0.080
	CNS0095601	Golden flower (diploid) 1	0.216
	CNS0095602	Golden flower (diploid) 2	0.190
	CNS0095603	Golden flower (diploid) 3	0.268
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.043
	CNS0095610	Silvery flower (tetraploid) 1	0.051
	CNS0095611	Silvery flower (tetraploid) 2	0.090
	CNS0095612	Silvery flower (tetraploid) 3	0.319
	CNS0095613	Golden flower (tetraploid) 1	0.163
	CNS0095614	Golden flower (tetraploid) 2	0.421
	CNS0095615	Golden flower (tetraploid) 3	0.100
CRA001975	CRR073297	Stem 1	1.012
	CRR073298	Stem 2	0.770
	CRR073299	Stem 3	0.230
	CRR073300	Leaf 1	0.128
	CRR073301	Leaf 2	0.202
	CRR073302	Leaf 3	0.159
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.098
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.071
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.118
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.276
	CRR073316	Gold flowering 2	1.132
	CRR073317	Gold flowering 3	0.681
	CRR073318	Tawny withering 1	0.313
	CRR073319	Tawny withering 2	0.291
	CRR073320	Tawny withering 3	0.000