Gene detail

Detail information of GWHGAAZE017273

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008228184.1	PREDICTED: uncharacterized protein LOC103327621 [Prunus mume]
Swissprot	tr\|Q9SYH1\|RSH3C_ARATH	Probable GTP diphosphokinase RSH3, chloroplastic (Precursor)
trEMBL	tr\|A0A067L885\|A0A067L885_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP40695.1}
TAIR10	AT1G54130.1	RELA/SPOT homolog 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3651274	3655983	+
GWHAAZE00000005	mRNA	3651274	3655983	+
GWHAAZE00000005	exon	3651274	3651978	+
GWHAAZE00000005	exon	3652076	3652261	+
GWHAAZE00000005	exon	3653416	3653472	+
GWHAAZE00000005	exon	3653908	3654535	+
GWHAAZE00000005	exon	3654637	3654814	+
GWHAAZE00000005	exon	3654900	3655203	+
GWHAAZE00000005	exon	3655580	3655983	+
GWHAAZE00000005	CDS	3651274	3651978	+
GWHAAZE00000005	CDS	3652076	3652261	+
GWHAAZE00000005	CDS	3653416	3653472	+
GWHAAZE00000005	CDS	3653908	3654535	+
GWHAAZE00000005	CDS	3654637	3654814	+
GWHAAZE00000005	CDS	3654900	3655203	+
GWHAAZE00000005	CDS	3655580	3655885	+
GWHAAZE00000005	three_prime_UTR	3655886	3655983	+

Transcript Sequence
>GWHTAAZE017293 ATGGCGGCGGTACCGTCCATAGCACTATATGCAAACCCTCCGACTGTGTGTTCGAATTCATCTTACGACTTTGATTTGAGCGGTCGGCCGTCTTTGTCGCCGTTGTGTACTGCCTCGCCGACTCAGAAACCGATTGCCGGTGGACTTTCCACCCTATTTTCTTCGCAATCGGTAGTCAAGCATGTTTCTTCCTCCAGTGGAGATGAAGAATTGGGGCCGTTATGGCACGAAAAGGGAGAATTATTCAATAATTCTCTCTGCTACTCGCCTTATCAATCGTTTACTTCGTCTATTAAACGAGATCAGAGCCCCGTATCTGTGTTTCAAGGCCCGGTTTCGTGTAGTAGTAGTTGGATTGGTTCTTCCAGAAGTTCACTGACGAGATTTGCACGAGAGAGAGGTTCTGATGTGAATCTGCAAGGTTGGTGTCGAACAGGAGGAAGCAATGGATTTGTTCGACATGCTTTGGGTTCCTGTGTTGATTATGATTCCCCTAGCTTTCAAATTCGTGATAATTCGCGCGATGTAGGATCGGCCGTTATGGTAGAAGAGCTTCCATTCAATATGGAGGATACTTTTATGGAGTCAAATTCACCACCGTACGCTAAAGATTTACTGTCGGGTGCACAAGTGAGACACAAGATTTTCTGCGATGATGTTGTTATTAAGGCTTTTTCTGAAGCTGAGAAGGCACATGGAGGGCAGATGCGAGCTAGTGGAGATCCTTATCTGCAGCATTGTGTAGAAACGGCAGTTTTGCTGGCAATGATTGGTGCTAACTCCACAGTAGTTGCTGCAGGGCTTTTACATGACACTCTTGATGATTCTTTCATGTGTTATGAATATATATCTCGAACTTTTGGAGCTGGGATTGCAGATCTGGTGGAAGAGAGTTGGAAGAAAAATCCGGTTACTGCATTCCTGGGAAATCATGGAGCTTCGTATTTGGTATCCAAACTAAGTCAATTGAGCAAGCTTGCTCGTGAAAGCAATACAGCATGTAAAACTGTTGAGGCTGATAGACTGCACACCATGATCCTAGCTAAGGCAGATACCAGAGCTGTCCTCATAAAACTGGCTGATCGTCTGCATAATATGATGACGTTAGATGCATTACCTTTAAGCAAGCAACAAAGATTTGCCAAGGAAACATTGGAGATACTTGTTCCTTTGGCTAATCGGTTAGGGATCATTAGTTGGAAAGAGCAAATAGAAAATTTATGTTTCAAACATCTCAATCCAGATCAGCACAAAGAACTTTCCTCCCAACTTTTGAAGTCTTTTGATGAAGCAAAGATAACTTCTGCTGTGGAGAAATTAGAGCCAGCCCTGAAAGATCGTGCTATTTCTTACCATGTTGTGTCGGGGCGGCCCAAAAGCCTGTATGGCATCTACTGCAAAATGTCAAAGTATACTCTCTCTCTCTCACACACACACACACATGCACGCGTGCGCTCACGCAAGTTTAGTCATGCACAAATGATTTTGATTCTTCTGAATGAGAAGGATATGATAGCATTTATGTATATGTACCTTTGGAAGTATCCAGTTGTCCAGTTATTAGCTCAGTGCCTCACATTTTTAATATTGTGTAGAAAGAAGCTAACTATGGATGAAATCCATGATATTCATGGGCTGCGGGTGATTGTCGAAAAAGTGGAAGATTGTTATAAAGCACTGCTGGTCGTTCACCAGTTATGGTCTGAAGTACCCGGAAAGTTCAAAGACTACATAAATCATCCCAAATGTAATGGGTATCAATCTCTACACACAGTGGTGATGGGGGAGGGTATGGTTCCACTTGAAGTTCAGATTAGAACAAAGGAGATGCACTTGCAAGCAGAGTATGGATTTGCAGCTCATTGGAGATACAAGGAAGGTGATTGTAAACACTCTACTTTTGTTGCTCATACGGTTGAGCGGGCGCGTTCATCCCTTGCAGATTCCATAAACCCGTCCTGTACATTCCCTTCCCATTCTAAAGATTGCCCGTATTCTTATAAACCTTTCTACAAACCAGATGGACCTGTTTTTGTCGCCATGACTGAAAATGACAAGATGTCAGTGCAGGAGTTTTCGGCAAACTCGACAGTTGTGGATGCGTTGGAAAGAGTGAGCCGAGGAAGCAGTAGATGGATGTCATATGGATTTGCTGTGAAAGAAGAATTGAGGCTGAGGGTGAATAATGAGCTGGTGAGTGATCCGACCTGTAAGCTGAAAATGGGGGACGTGGTGGAGCTAGCACCAACCATACCCTACAAGTCGTTAGTCAAGTACAGGGAAGAGATCCAGCGTATGTATGACCGTGGTCTTCCTGTGTCCAGAACGGGTCCTTCTGCTGCCAGTAGCATGGTTGGCCGGTGAATTTGACCCATGGGTTAATCAGTTCGTCTTGTATATATGTGCCCATTGAATCTTTGTACAGAGCCTTGCCTAATCTTCTATTTTGAAGAACAATGGCT

Network for GWHGAAZE017273

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13328.7	HD_4	224	397	2.30E-30
PF04607.18	RelA_SpoT	536	627	2.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00951	relA	Metabolic pathways	map01100
K00951	relA	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0015969	biological_process	guanosine tetraphosphate metabolic process
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.491
	SRR3591706	second leaf	9.930
	SRR3591707	mature leaf	23.408
	SRR3591708	Shoot apex	12.223
	SRR3591709	Stem	62.121
	SRR3591710	White floral bud	52.093
	SRR3591711	White flower	58.364
	SRR3591712	Green floral bud	33.737
	SRR3591713	Yellow flower	42.780
SRP173429	SRR8316895	Juvenile bud stage	15.491
	SRR8316896	Juvenile bud stage	21.082
	SRR8316897	Juvenile bud stage	10.745
	SRR8316894	Third green stage	8.674
	SRR8316900	Third green stage	23.226
	SRR8316901	Third green stage	26.214
	SRR8316898	Complete white stage	19.879
	SRR8316899	Complete white stage	48.377
	SRR8316903	Complete white stage	30.789
	SRR8316902	Silver flowering stage	20.184
	SRR8316904	Silver flowering stage	30.209
	SRR8316905	Silver flowering stage	13.694
	SRR8316906	Gold flowering stage	45.066
	SRR8316907	Gold flowering stage	42.387
	SRR8316908	Gold flowering stage	46.500
SRP132670	SRR6706286	Control	23.767
	SRR6706287	Light intensity 50%	24.556
	SRR6706288	Light intensity 20%	25.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.889
	CNS0095593	Slightly white alabastrum(diploid) 2	18.950
	CNS0095594	Slightly white alabastrum(diploid) 3	20.472
	CNS0095595	Whole white alabastrum(diploid) 2	17.335
	CNS0095596	Whole white alabastrum(diploid) 3	13.193
	CNS0095597	Whole white alabastrum(diploid) 4	14.570
	CNS0095598	Silvery flower (diploied) 1	35.302
	CNS0095599	Silvery flower (diploied) 2	26.337
	CNS0095600	Silvery flower (diploied) 3	45.878
	CNS0095601	Golden flower (diploid) 1	40.628
	CNS0095602	Golden flower (diploid) 2	48.859
	CNS0095603	Golden flower (diploid) 3	48.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.694
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.370
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.146
	CNS0095610	Silvery flower (tetraploid) 1	55.031
	CNS0095611	Silvery flower (tetraploid) 2	56.539
	CNS0095612	Silvery flower (tetraploid) 3	37.059
	CNS0095613	Golden flower (tetraploid) 1	28.747
	CNS0095614	Golden flower (tetraploid) 2	42.153
	CNS0095615	Golden flower (tetraploid) 3	65.810
CRA001975	CRR073297	Stem 1	32.792
	CRR073298	Stem 2	30.646
	CRR073299	Stem 3	25.959
	CRR073300	Leaf 1	44.295
	CRR073301	Leaf 2	38.677
	CRR073302	Leaf 3	25.231
	CRR073303	Juvenile bud 1	32.139
	CRR073304	Juvenile bud 2	30.669
	CRR073305	Juvenile bud 3	40.104
	CRR073306	Third green 1	20.871
	CRR073307	Third green 2	18.293
	CRR073308	Third green 3	20.209
	CRR073309	Second white 1	21.547
	CRR073310	Second white 2	24.935
	CRR073311	Second white 3	25.865
	CRR073312	Silver flowering 1	23.814
	CRR073313	Silver flowering 2	21.314
	CRR073314	Silver flowering 3	16.019
	CRR073315	Gold flowering 1	17.841
	CRR073316	Gold flowering 2	27.837
	CRR073317	Gold flowering 3	21.864
	CRR073318	Tawny withering 1	30.089
	CRR073319	Tawny withering 2	29.626
	CRR073320	Tawny withering 3	27.237