Gene detail

Detail information of GWHGAAZE017274

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97851.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	2E-10	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|A0A068TNP8\|A0A068TNP8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97851.1}
TAIR10	AT1G54150.1	8E-65	E3 Ubiquitin ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3671122	3679383	+
GWHAAZE00000005	mRNA	3671122	3679383	+
GWHAAZE00000005	exon	3671122	3671458	+
GWHAAZE00000005	exon	3676594	3676627	+
GWHAAZE00000005	exon	3677093	3677237	+
GWHAAZE00000005	exon	3677725	3677895	+
GWHAAZE00000005	exon	3678074	3678195	+
GWHAAZE00000005	exon	3678451	3678570	+
GWHAAZE00000005	exon	3679078	3679383	+
GWHAAZE00000005	CDS	3671122	3671458	+
GWHAAZE00000005	CDS	3676594	3676627	+
GWHAAZE00000005	CDS	3677093	3677237	+
GWHAAZE00000005	CDS	3677725	3677895	+
GWHAAZE00000005	CDS	3678074	3678195	+
GWHAAZE00000005	CDS	3678451	3678570	+
GWHAAZE00000005	CDS	3679078	3679369	+
GWHAAZE00000005	three_prime_UTR	3679370	3679383	+

Transcript Sequence
>GWHTAAZE017294 ATGTCTGTACACGACCAAGCCGCCGCAGCAGTCATATCTCAAGTTGCCCTAGCCGCCGACGGTGCCGTACTCGGCCTAGCCCTAGCATATGTTGCCGTCCGTAGCATCATCAAATTCACCTCCGCCTCCTCATCCCTCCGCAAGATCTCCGACGCCCCTTCCCTCCCTGTCTCCGATCTCCGTCGACTCCTCGAAGACCATGCCAACGATGTTTCGAGTCAATCCGAAGGTGGAGGAAGGATTGTGATCGTTAGCGGCACTGTTGATTCAAAGTCGGTTGTCGATGGAAATTGGAAGAGTTTGAGACCTAACAACGTACTCACTTCTCACGAGTCTGGACAAACTGCTCTGATACCAATTGTTAGAATAAGTGCATATACACCGAGTGGAGGGGATTCTTTGGATGGACATCTGACCTACGTTCGATATTTGAGATCCTGGAAAGAGCAAGAGTCGTCCTCATTGAGAATGGTATATCCTCGTACTCCAGCAGTCTTCATTGAATATGTGAATCATGTTCCTTTTGTTCTTGTGGAAGGCGGGAAGTGGCCACAGTCTGATTTTGTTATCGTGAACATGGATGGCTCAAGACACCCATTACCTCTTACAACGGTTTATCACAACTTGCAGCCCGTTAGTGCTTCTCCGTATACTTTCCTCCAGGCACTCTTCGGACATGAATACCCTGTTGGGCTGCTGGATGAAGAGAAAATTCTTCCACTTGGAAAGGATATCACTGCAGTCGGCACATGCAGTTTAAAAGATGGAACTCCTGTGATCACGTCAAGCAAGGATCTTCCCTATTTCTTGTCTGAATTGACTAAGGATCAGATGGTAGTAGAACTCGCCTTCAAGACTAAAGTGTTACTGTGGAGTGGGGTCGTTCTTGGTTCATTGGCAGTAGGTATCCTTGGTTACGCCATTGTAAGGAACTGGAATAGATGGAAACAGTGGAAACAACAGAGGCAACTCCATCAACAAAACGCTGCTGCTGCTAGCAATGAGGCTGACGCTGAGGGAGCGGAGGAGGAGACAGGGGATGCTCCAGATGGAGAGCTGTGCGTGATCTGCCTGATGAGGCGAAGGCGATCTGCATTCATTCCATGTGGGCACATGGTCTGTTGCCAACGATGTGCTCTATCGGTCGAACGTGAATTAGCACCAAAATGTCCTGTTTGTAGGCAGGCTATCCGCAATTTGGTGAGGATATATGATTCTTGAGGAACAGACAACTG

Network for GWHGAAZE017274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12483.9	GIDE	170	303	1.90E-35
PF13920.7	zf-C3HC4_3	352	398	2.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006996	biological_process	organelle organization
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.577
	SRR3591706	second leaf	19.204
	SRR3591707	mature leaf	23.955
	SRR3591708	Shoot apex	23.459
	SRR3591709	Stem	23.532
	SRR3591710	White floral bud	28.075
	SRR3591711	White flower	32.953
	SRR3591712	Green floral bud	28.542
	SRR3591713	Yellow flower	31.217
SRP173429	SRR8316895	Juvenile bud stage	15.121
	SRR8316896	Juvenile bud stage	18.990
	SRR8316897	Juvenile bud stage	9.055
	SRR8316894	Third green stage	7.185
	SRR8316900	Third green stage	18.874
	SRR8316901	Third green stage	18.062
	SRR8316898	Complete white stage	5.534
	SRR8316899	Complete white stage	23.518
	SRR8316903	Complete white stage	17.477
	SRR8316902	Silver flowering stage	8.448
	SRR8316904	Silver flowering stage	11.171
	SRR8316905	Silver flowering stage	4.904
	SRR8316906	Gold flowering stage	17.894
	SRR8316907	Gold flowering stage	19.489
	SRR8316908	Gold flowering stage	18.116
SRP132670	SRR6706286	Control	18.989
	SRR6706287	Light intensity 50%	20.107
	SRR6706288	Light intensity 20%	21.504
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.027
	CNS0095593	Slightly white alabastrum(diploid) 2	25.139
	CNS0095594	Slightly white alabastrum(diploid) 3	22.344
	CNS0095595	Whole white alabastrum(diploid) 2	16.822
	CNS0095596	Whole white alabastrum(diploid) 3	14.559
	CNS0095597	Whole white alabastrum(diploid) 4	14.866
	CNS0095598	Silvery flower (diploied) 1	25.867
	CNS0095599	Silvery flower (diploied) 2	22.962
	CNS0095600	Silvery flower (diploied) 3	28.770
	CNS0095601	Golden flower (diploid) 1	27.047
	CNS0095602	Golden flower (diploid) 2	30.052
	CNS0095603	Golden flower (diploid) 3	29.815
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.907
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.790
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.818
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.088
	CNS0095610	Silvery flower (tetraploid) 1	31.404
	CNS0095611	Silvery flower (tetraploid) 2	35.871
	CNS0095612	Silvery flower (tetraploid) 3	27.480
	CNS0095613	Golden flower (tetraploid) 1	28.837
	CNS0095614	Golden flower (tetraploid) 2	33.499
	CNS0095615	Golden flower (tetraploid) 3	38.653
CRA001975	CRR073297	Stem 1	34.657
	CRR073298	Stem 2	26.432
	CRR073299	Stem 3	37.946
	CRR073300	Leaf 1	32.212
	CRR073301	Leaf 2	28.635
	CRR073302	Leaf 3	28.342
	CRR073303	Juvenile bud 1	30.312
	CRR073304	Juvenile bud 2	22.770
	CRR073305	Juvenile bud 3	38.371
	CRR073306	Third green 1	15.670
	CRR073307	Third green 2	13.192
	CRR073308	Third green 3	16.834
	CRR073309	Second white 1	17.904
	CRR073310	Second white 2	18.494
	CRR073311	Second white 3	16.039
	CRR073312	Silver flowering 1	14.453
	CRR073313	Silver flowering 2	18.022
	CRR073314	Silver flowering 3	20.858
	CRR073315	Gold flowering 1	25.498
	CRR073316	Gold flowering 2	27.515
	CRR073317	Gold flowering 3	22.483
	CRR073318	Tawny withering 1	29.721
	CRR073319	Tawny withering 2	29.410
	CRR073320	Tawny withering 3	32.253