Detail information of GWHGAAZE017275


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007024627.18.29986E-63Nodulation-signaling pathway 1 protein, putative [Theobroma cacao]
Swissprottr|Q4VYC8|NSP1_MEDTR4E-56Nodulation-signaling pathway 1 protein
trEMBLtr|A0A061GJK7|A0A061GJK7_THECC3E-63Nodulation-signaling pathway 1 protein, putative {ECO:0000313|EMBL:EOY27249.1}
TAIR10AT3G13840.15E-38GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene36797913680195-
GWHAAZE00000005mRNA36797913680195-
GWHAAZE00000005exon36797913680195-
GWHAAZE00000005CDS36797913680195-
Transcript Sequence

Network for GWHGAAZE017275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS41265.20E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.883
SRR3591706second leaf0.642
SRR3591707mature leaf0.872
SRR3591708Shoot apex0.285
SRR3591709Stem2.042
SRR3591710White floral bud0.505
SRR3591711White flower0.248
SRR3591712Green floral bud0.235
SRR3591713Yellow flower0.988
SRP173429 SRR8316895Juvenile bud stage 0.394
SRR8316896Juvenile bud stage 0.589
SRR8316897Juvenile bud stage 0.310
SRR8316894Third green stage 0.701
SRR8316900Third green stage 0.268
SRR8316901Third green stage 0.773
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.383
SRR8316903Complete white stage 0.314
SRR8316902Silver flowering stage0.357
SRR8316904Silver flowering stage0.253
SRR8316905Silver flowering stage0.043
SRR8316906Gold flowering stage 0.189
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.130
SRR6706287Light intensity 50%0.487
SRR6706288Light intensity 20%0.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.380
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.497
CNS0095596Whole white alabastrum(diploid) 30.311
CNS0095597Whole white alabastrum(diploid) 40.379
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.980
CNS0095601Golden flower (diploid) 10.102
CNS0095602Golden flower (diploid) 20.120
CNS0095603Golden flower (diploid) 30.817
CNS0095604Slightly white alabastrum(tetraploid) 10.434
CNS0095605Slightly white alabastrum(tetraploid) 20.624
CNS0095606Slightly white alabastrum(tetraploid) 30.900
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.566
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.125
CNS0095611Silvery flower (tetraploid) 20.286
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.079
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.333
CRA001975CRR073297Stem 10.846
CRR073298Stem 21.209
CRR073299Stem 30.177
CRR073300Leaf 11.010
CRR073301Leaf 21.015
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.476
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.175
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.480
CRR073320Tawny withering 30.000