Gene detail

Detail information of GWHGAAZE017279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007024611.1	1.66519E-93	Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|Q9FJA2\|TT2_ARATH	6E-64	Transcription factor TT2
trEMBL	tr\|A0A061GCW5\|A0A061GCW5_THECC	6E-94	Duplicated homeodomain-like superfamily protein, putative {ECO:0000313\|EMBL:EOY27233.1}
TAIR10	AT5G35550.1	3E-53	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3758082	3760046	-
GWHAAZE00000005	mRNA	3758082	3760046	-
GWHAAZE00000005	exon	3758082	3758679	-
GWHAAZE00000005	exon	3759515	3759644	-
GWHAAZE00000005	exon	3759820	3759944	-
GWHAAZE00000005	exon	3760024	3760046	-
GWHAAZE00000005	CDS	3760024	3760046	-
GWHAAZE00000005	CDS	3759820	3759944	-
GWHAAZE00000005	CDS	3759515	3759644	-
GWHAAZE00000005	CDS	3758082	3758679	-

Transcript Sequence
>GWHTAAZE017299 ATGGCTAGAGCAGAAAGAGCTAGACCATGTTGTTCAAAGGAAGACGGATTAAACAGAGGAGCTTGGACAGCTATGGAAGACAAAATTCTCAGAGACTACATTACACTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAGATGGCAGGTCTAAGAAGGTGCGGAAAGAGTTGCAGACTTCGATGGTTAAATTATCTCAGACCTGGCATTAAGAGAGGAAACATCACTCACGACGAAGAGGATCTTATTATCAGGCTTCACAACCTCCTTGGAAACAGATGGTCATTAATAGCTGGTAGACTTCCAGGGAGGACAGACAATGAAATAAAAAATTACTGGAACACCAATATGATCAAGAAAACGCAAGGTCATCAACCAATTACCACCCTAGCTTCAAATTCTAAGACCTCTAGCGAATCGAAACAAAAGCAAATTCATTTATCTGGAGGGCAGAAGCAAAATTCACCAACATCATGTGTGGTCCGTACAAAGGCATCAAGGTGCACCAAAGTTTTCGTCACACAGCAGCCAGAAAATATTCAACCACTTGATACTAAACTAGTGGTTGTTAAGCAAAACACTGATGCCTCCACAGTACCTCCGGAACCTTACAGTGGGGCCTCGCCGTATGATCTCACTACTGATCATTTTGAAATGGACGAGAAATTCTTGTCCAATTTTCTTGATATCGAATTTGCGGCACTCAGTGAGTTAATTGATGGGTTAGAAGGTGACAATAAAACCAACATAAGCGTGGACTTGTCTTCTTCGGATTCTAATCAAAGGCTGTGTTTTCCTCAAGAAAAGCTACATGACATGGATCTTGGATCAATGGCATCTCTTGTTGATCCGGACATGAATTGGCTTCAAGACTAG

Network for GWHGAAZE017279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	19	66	1.50E-13
PF00249.32	Myb_DNA-binding	72	115	3.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.931
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.189
	SRR3591708	Shoot apex	0.505
	SRR3591709	Stem	10.871
	SRR3591710	White floral bud	0.935
	SRR3591711	White flower	1.227
	SRR3591712	Green floral bud	0.735
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.093
	SRR8316896	Juvenile bud stage	0.606
	SRR8316897	Juvenile bud stage	0.228
	SRR8316894	Third green stage	0.242
	SRR8316900	Third green stage	0.503
	SRR8316901	Third green stage	0.178
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.771
	SRR8316903	Complete white stage	0.779
	SRR8316902	Silver flowering stage	0.168
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.214
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.058
SRP132670	SRR6706286	Control	0.149
	SRR6706287	Light intensity 50%	0.221
	SRR6706288	Light intensity 20%	0.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.689
	CNS0095593	Slightly white alabastrum(diploid) 2	1.290
	CNS0095594	Slightly white alabastrum(diploid) 3	4.595
	CNS0095595	Whole white alabastrum(diploid) 2	1.247
	CNS0095596	Whole white alabastrum(diploid) 3	0.981
	CNS0095597	Whole white alabastrum(diploid) 4	1.522
	CNS0095598	Silvery flower (diploied) 1	2.468
	CNS0095599	Silvery flower (diploied) 2	2.594
	CNS0095600	Silvery flower (diploied) 3	1.118
	CNS0095601	Golden flower (diploid) 1	2.343
	CNS0095602	Golden flower (diploid) 2	0.948
	CNS0095603	Golden flower (diploid) 3	0.764
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.459
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.915
	CNS0095610	Silvery flower (tetraploid) 1	0.161
	CNS0095611	Silvery flower (tetraploid) 2	0.220
	CNS0095612	Silvery flower (tetraploid) 3	0.586
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.584
	CRR073298	Stem 2	0.879
	CRR073299	Stem 3	0.048
	CRR073300	Leaf 1	0.935
	CRR073301	Leaf 2	0.609
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.179
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.134
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	28.147
	CRR073319	Tawny withering 2	8.004
	CRR073320	Tawny withering 3	16.523