Gene detail

Detail information of GWHGAAZE017280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006465927.1	7.75633E-71	PREDICTED: transcription initiation factor TFIID subunit 12b-like [Citrus sinensis]
Swissprot	tr\|B2C6R6\|TAFCL_ARATH	1E-66	Transcription initiation factor TFIID subunit 12b
trEMBL	tr\|A0A067FCH7\|A0A067FCH7_CITSI	6E-71	Uncharacterized protein {ECO:0000313\|EMBL:KDO65043.1}
TAIR10	AT1G17440.2	5E-46	Transcription initiation factor TFIID subunit A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3772980	3777974	-
GWHAAZE00000005	mRNA	3772980	3777974	-
GWHAAZE00000005	exon	3777767	3777974	-
GWHAAZE00000005	exon	3777088	3777230	-
GWHAAZE00000005	exon	3776699	3776773	-
GWHAAZE00000005	exon	3774794	3774872	-
GWHAAZE00000005	exon	3774100	3774164	-
GWHAAZE00000005	exon	3773299	3773334	-
GWHAAZE00000005	exon	3772980	3773213	-
GWHAAZE00000005	CDS	3777767	3777974	-
GWHAAZE00000005	CDS	3777088	3777230	-
GWHAAZE00000005	CDS	3776699	3776773	-
GWHAAZE00000005	CDS	3774794	3774872	-
GWHAAZE00000005	CDS	3774100	3774164	-
GWHAAZE00000005	CDS	3773299	3773334	-
GWHAAZE00000005	CDS	3773121	3773213	-
GWHAAZE00000005	three_prime_UTR	3772980	3773120	-

Transcript Sequence
>GWHTAAZE017300 ATGAACCCTCAGTTATCTGCGTTGCCACAAAATGGACAGCCAGCTGTGATTCAGAACACTTTGACACAGCAACAGTGGTTAAAACAAACACCCACAATATCTTCTCCTAATTCTCCTTCATATCGCCTTCAACAACAGAGACAACAACAAGCACTTTTACAGCAGCAACTAGCTTCCTCTCAGTTACACCAAAATCCAATCCACAGCAGTCAAAAATCTCTTAGCCTGACCGGATTGCAGCCTGATGCCACTGCATCTGGTACCACCACACCAGGAGGTAGCTCAAGCCAAGGAACAACAGCAAGCAATCAACTTCTTGGGAGAAGAACAATACAAGATTTGGTTTCACAGGTGGACCCACAGGCAAAGCTGGATCCTAAACTTGAAGATCTTCTTTGGGAACTTGCTGATGACTTCATTGATTCGGCTACTACGTTTGCATGCACTTTGGCAAAGCATCGGAAGTCATCAACTGTAGAGGCCAAGGATGTATTGCTACACCTAGAGAAAAACTTGAATTTGACAGTTCCAGGGTTCTCAAGCGAAGATAGAAAACACCAACAGCACAATCCATCAAGTGATCTCCACAAAAAGCGTCTTGATATGATTCAAGCACTGATGGGACCCTCATCTTCTGAAGCAAATATGAATGATACTAATGAGGCTGCCAGTACAGGGAATGGCAAGTCTCAACCTTGACAAGGCGACAGGTATCAATTTTTTGGAACGCAGAGGAAAGGAAGTGGAATCATAGATACAGTGAAATTTTTGTGATAGTTATCAATAAATTTTATCGGGTTTTATACTTTGAGAAGTGGAAGGATGCTCTAGCCTCCGAGA

Network for GWHGAAZE017280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0245

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03847.14	TFIID_20kDa	108	174	8.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03126	TAF12	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005669	cellular_component	transcription factor TFIID complex
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.555
	SRR3591706	second leaf	4.106
	SRR3591707	mature leaf	2.449
	SRR3591708	Shoot apex	6.648
	SRR3591709	Stem	4.540
	SRR3591710	White floral bud	5.970
	SRR3591711	White flower	5.037
	SRR3591712	Green floral bud	5.117
	SRR3591713	Yellow flower	3.890
SRP173429	SRR8316895	Juvenile bud stage	6.515
	SRR8316896	Juvenile bud stage	9.385
	SRR8316897	Juvenile bud stage	5.831
	SRR8316894	Third green stage	2.999
	SRR8316900	Third green stage	6.641
	SRR8316901	Third green stage	6.947
	SRR8316898	Complete white stage	0.761
	SRR8316899	Complete white stage	7.540
	SRR8316903	Complete white stage	5.497
	SRR8316902	Silver flowering stage	2.889
	SRR8316904	Silver flowering stage	3.521
	SRR8316905	Silver flowering stage	1.343
	SRR8316906	Gold flowering stage	3.725
	SRR8316907	Gold flowering stage	4.413
	SRR8316908	Gold flowering stage	4.677
SRP132670	SRR6706286	Control	11.059
	SRR6706287	Light intensity 50%	11.731
	SRR6706288	Light intensity 20%	11.782
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.338
	CNS0095593	Slightly white alabastrum(diploid) 2	2.889
	CNS0095594	Slightly white alabastrum(diploid) 3	4.260
	CNS0095595	Whole white alabastrum(diploid) 2	4.131
	CNS0095596	Whole white alabastrum(diploid) 3	2.389
	CNS0095597	Whole white alabastrum(diploid) 4	3.646
	CNS0095598	Silvery flower (diploied) 1	5.474
	CNS0095599	Silvery flower (diploied) 2	3.332
	CNS0095600	Silvery flower (diploied) 3	3.819
	CNS0095601	Golden flower (diploid) 1	4.682
	CNS0095602	Golden flower (diploid) 2	4.559
	CNS0095603	Golden flower (diploid) 3	4.275
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.947
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.753
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.399
	CNS0095610	Silvery flower (tetraploid) 1	6.451
	CNS0095611	Silvery flower (tetraploid) 2	7.357
	CNS0095612	Silvery flower (tetraploid) 3	2.190
	CNS0095613	Golden flower (tetraploid) 1	1.797
	CNS0095614	Golden flower (tetraploid) 2	4.406
	CNS0095615	Golden flower (tetraploid) 3	1.660
CRA001975	CRR073297	Stem 1	15.539
	CRR073298	Stem 2	12.824
	CRR073299	Stem 3	2.952
	CRR073300	Leaf 1	13.321
	CRR073301	Leaf 2	15.111
	CRR073302	Leaf 3	3.921
	CRR073303	Juvenile bud 1	2.925
	CRR073304	Juvenile bud 2	0.871
	CRR073305	Juvenile bud 3	4.141
	CRR073306	Third green 1	0.229
	CRR073307	Third green 2	0.031
	CRR073308	Third green 3	0.341
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.698
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.183
	CRR073313	Silver flowering 2	0.103
	CRR073314	Silver flowering 3	0.242
	CRR073315	Gold flowering 1	0.379
	CRR073316	Gold flowering 2	1.274
	CRR073317	Gold flowering 3	0.357
	CRR073318	Tawny withering 1	2.558
	CRR073319	Tawny withering 2	3.034
	CRR073320	Tawny withering 3	1.959