Detail information of GWHGAAZE017281


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002299594.11.78465E-44transcription initiation factor IID subunit A family protein [Populus trichocarpa]
Swissprottr|Q940A7|TA12B_ARATH4E-35Transcription initiation factor TFIID subunit 12b
trEMBLtr|B9GKV4|B9GKV4_POPTR7E-45Transcription initiation factor IID subunit A family protein {ECO:0000313|EMBL:EEE84399.1}
TAIR10AT1G17440.23E-19Transcription initiation factor TFIID subunit A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene37811163782014-
GWHAAZE00000005mRNA37811163782014-
GWHAAZE00000005exon37811163781346-
GWHAAZE00000005exon37814843782014-
GWHAAZE00000005CDS37814843782014-
GWHAAZE00000005CDS37811163781346-
Transcript Sequence

Network for GWHGAAZE017281

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0245


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03126TAF12 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.432
SRR3591706second leaf3.833
SRR3591707mature leaf1.940
SRR3591708Shoot apex5.028
SRR3591709Stem6.793
SRR3591710White floral bud4.057
SRR3591711White flower5.788
SRR3591712Green floral bud4.509
SRR3591713Yellow flower1.902
SRP173429 SRR8316895Juvenile bud stage 6.396
SRR8316896Juvenile bud stage 8.816
SRR8316897Juvenile bud stage 5.279
SRR8316894Third green stage 3.775
SRR8316900Third green stage 7.091
SRR8316901Third green stage 6.806
SRR8316898Complete white stage 0.849
SRR8316899Complete white stage 7.279
SRR8316903Complete white stage 5.515
SRR8316902Silver flowering stage2.044
SRR8316904Silver flowering stage5.586
SRR8316905Silver flowering stage1.069
SRR8316906Gold flowering stage 3.709
SRR8316907Gold flowering stage 4.680
SRR8316908Gold flowering stage 3.587
SRP132670SRR6706286Control15.911
SRR6706287Light intensity 50%17.630
SRR6706288Light intensity 20%15.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.505
CNS0095593Slightly white alabastrum(diploid) 23.121
CNS0095594Slightly white alabastrum(diploid) 32.032
CNS0095595Whole white alabastrum(diploid) 21.629
CNS0095596Whole white alabastrum(diploid) 31.421
CNS0095597Whole white alabastrum(diploid) 42.074
CNS0095598Silvery flower (diploied) 15.166
CNS0095599Silvery flower (diploied) 23.482
CNS0095600Silvery flower (diploied) 34.307
CNS0095601Golden flower (diploid) 14.582
CNS0095602Golden flower (diploid) 25.090
CNS0095603Golden flower (diploid) 34.346
CNS0095604Slightly white alabastrum(tetraploid) 13.574
CNS0095605Slightly white alabastrum(tetraploid) 23.101
CNS0095606Slightly white alabastrum(tetraploid) 312.527
CNS0095607Whole white alabastrum(tetraploid) 12.769
CNS0095608Whole white alabastrum(tetraploid) 22.128
CNS0095609Whole white alabastrum(tetraploid) 34.821
CNS0095610Silvery flower (tetraploid) 16.286
CNS0095611Silvery flower (tetraploid) 25.785
CNS0095612Silvery flower (tetraploid) 31.827
CNS0095613Golden flower (tetraploid) 11.174
CNS0095614Golden flower (tetraploid) 24.550
CNS0095615Golden flower (tetraploid) 32.997
CRA001975CRR073297Stem 114.159
CRR073298Stem 212.280
CRR073299Stem 32.210
CRR073300Leaf 114.389
CRR073301Leaf 214.011
CRR073302Leaf 32.472
CRR073303Juvenile bud 13.333
CRR073304Juvenile bud 21.222
CRR073305Juvenile bud 35.504
CRR073306Third green 10.081
CRR073307Third green 20.431
CRR073308Third green 30.806
CRR073309Second white 10.107
CRR073310Second white 20.139
CRR073311Second white 30.000
CRR073312Silver flowering 10.056
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.559
CRR073316Gold flowering 21.322
CRR073317Gold flowering 30.410
CRR073318Tawny withering 13.145
CRR073319Tawny withering 23.309
CRR073320Tawny withering 33.928